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gttttactatttctttgttcttttcagtgattaattcttacagaagtaaatctctcttgaactagtcatgatatcatctttgccaaccatctcacagCTCAAAGATCTTCAAGTCTACACCATTGTCCGTGTTGTATTTCAACTATCAGAGGAGATCCCTTGCATCTCTGCTGTTGTTGTTGCTCTTCTTGCAGAG
species | Oryza sativa |
transcript | LOC_Os07g22640.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAGCATAATCCTTGCTGTTGATGCTGCTGTTGCATCACTTCCTATTCAG CTCAAAGATCTTCAAGTCTACACCATTGTCCGTGTTGTATTTCAACTATCAEST: gi|29624991|gb|CB630002.1|CB630002
genomic: CAAGCATAATCCTTGCTGTTGATGCTGTTGTTGCATCACTTCCTATTCAGgttttactat ... catctcacagCTCAAAGATCTTCAAGTCTACACCATTGTCCGTGTTGTATTTCAACTATCA
EST: CAAGCATAATCCTTGCTGTTGATGCTGTTGTTGCATCACTTCCTATTCAG CTCAAAGATCTTCAAGTCTACACCATTGTCCGTGTTGTATTTCAACTATCAEST: gi|86904903|gb|CI310696.1|CI310696
genomic: CAAGCATAATCCTTGCTGTTGATGCTGTTGTTGCATCACTTCCTATTCAGgttttactat ... catctcacagCTCAAAGATCTTCAAGTCTACACCATTGTCCGTGTTGTATTTCAACTATCA
EST: CAAGCATAATCCTTGCTGTTGATGCTGTTGTTGCATCACTTCCTATTCAG CTCAAAGATCTTCAAGTCTACACCATTGTCCGTEST: gi|44674448|gb|CR287882.1|CR287882
genomic: CAAGCATAATCCTTGCTGTTGATGCTGTTGTTGCATCACTTCCTATTCAGgttttactat ... catctcacagCTCAAAGATCTTCAAGTCTACACCATTGTCCGT
EST: CAAGCATAATCCTTGCTGTTGATGCTGTTGTTGCATCACTTCCTATTCAG CTCAAAGATCTTCAAGTCTACACCATTGTCCGTGTTGTATTTCAACTATCAEST: gi|29630138|gb|CB635147.1|CB635147
genomic: CAAGCATAATCCTTGCTGTTGATGCTGTTGTTGCATCACTTCCTATTCAGgttttactat ... catctcacagCTCAAAGATCTTCAAGTCTACACCATTGTCCGTGTTGTATTTCAACTATCA
EST: CAAGCATAATCCTTGCTGTTGATGCTGTTGTTGCATCACTTCCTATTCAG CTCAAAGATCTTCAAGTCTACACCATTGTCCGTGTTGTATTTCAACTATCAEST: gi|58606676|gb|CK034709.1|CK034709
genomic: CAAGCATAATCCTTGCTGTTGATGCTGTTGTTGCATCACTTCCTATTCAGgttttactat ... catctcacagCTCAAAGATCTTCAAGTCTACACCATTGTCCGTGTTGTATTTCAACTATCA
EST: CAAGCATAATCCTTGCTGTTGATGCTGTTGTTGCATCACTTCCTATTCAG CTCAAAGATCTTCAAGTCEST: gi|29662931|gb|CB659206.1|CB659206
genomic: CAAGCATAATCCTTGCTGTTGATGCTGTTGTTGCATCACTTCCTATTCAGgttttactat ... catctcacagCTCAAAGATCTTCAAGTC
EST: CAAGCATAATCCTTGCTGTTGATGCTGTTGTTGCATCACTTCCTATTCAG CTCAAAGATCTTCAAGTCTACACCATTGTCCGTGTTGTATTTCAACTATCAEST: gi|29624993|gb|CB630004.1|CB630004
genomic: CAAGCATAATCCTTGCTGTTGATGCTGTTGTTGCATCACTTCCTATTCAGgttttactat ... catctcacagCTCAAAGATCTTCAAGTCTACACCATTGTCCGTGTTGTATTTCAACTATCA
EST: CAAGCATAATCCTTGCTGTTGATGCTGTTGTTGCATCACTTCCTATTCAG CTCAAAGATCTTCAAGTCTACACCATTGTCCGTGTTGTATTTCAACTATCA
genomic: CAAGCATAATCCTTGCTGTTGATGCTGTTGTTGCATCACTTCCTATTCAGgttttactat ... catctcacagCTCAAAGATCTTCAAGTCTACACCATTGTCCGTGTTGTATTTCAACTATCA
gaagtaaatctctcttgaactagtcatgatatcatctttgccaaccatctcacagCTCAAAGATCTTCAAGTCTACACCATTGTCCGTGTTGTATTTCAACTATCAGAGGAGATCCCTTGCATCTCTGCTGTTGTTGTTGCTCTTCTTGCAGAG
ccatctc CT-rich tract
atgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttactatttctttgttcttttcagtgattaattcttacagaagtaaatctctcttgaactagtcatgatatcatctttgccaaccatctcacagCTCAAAGATCTTCAAGTCTACACCATTGTCCGTGTTGTATTTCAACTATCAGAGGAGATCCCTTGCATCTCTGCTGTTGTTGTTGCTCTTCTTGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT