1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttctgttgagaccatcagaagttctggactatttgttgtctggagctaaagcactgatataactttattcttatccagGTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTCCTCAAGCCTGGTATTGAAGACACTTTGGTGGCTGACCTGAATTTTATCT
species | Oryza sativa |
transcript | LOC_Os07g12530.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAG GTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTCEST: gi|29677141|gb|CB673416.1|CB673416
genomic: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAGgtttctgttg ... tcttatccagGTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTC
EST: CATTGATCCAGTTCCAATATTTTCTGCGTCAATAGCACAG GTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTCEST: gi|29615293|gb|CB620305.1|CB620305
genomic: CATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAGgtttctgttg ... tcttatccagGTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTC
EST: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAG GTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTCEST: gi|29615266|gb|CB620278.1|CB620278
genomic: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAGgtttctgttg ... tcttatccagGTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTC
EST: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAG GTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTCEST: gi|29619070|gb|CB624082.1|CB624082
genomic: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAGgtttctgttg ... tcttatccagGTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTC
EST: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAG GTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTCEST: gi|29615258|gb|CB620270.1|CB620270
genomic: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAGgtttctgttg ... tcttatccagGTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTC
EST: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAT GTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTCEST: gi|29615291|gb|CB620303.1|CB620303
genomic: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAGgtttctgttg ... tcttatccagGTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTC
EST: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAG GTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTCEST: gi|29615505|gb|CB620517.1|CB620517
genomic: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAGgtttctgttg ... tcttatccagGTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTC
EST: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAG GTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTCEST: gi|29615222|gb|CB620235.1|CB620235
genomic: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAGgtttctgttg ... tcttatccagGTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTC
EST: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAG GTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTCEST: gi|29615327|gb|CB620339.1|CB620339
genomic: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAGgtttctgttg ... tcttatccagGTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTC
EST: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAG GTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGGC
genomic: TATATGAATACATTGATCCAGTTCCAATAGCTTCTGCGTCAATAGCACAGgtttctgttg ... tcttatccagGTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTC
ctggactatttgttgtctggagctaaagcactgatataactttattcttatccagGTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTCCTCAAGCCTGGTATTGAAGACACTTTGGTGGCTGACCTGAATTTTATCT
atataac putative branch site (score: 3)
ctttattcttatcc CT-rich tract
atataactttattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctgttgagaccatcagaagttctggactatttgttgtctggagctaaagcactgatataactttattcttatccagGTTCATGGGGCAAGGTTGAAGAGCTCTCAGAAGGATGTGGTTATCAAGGTCCTCAAGCCTGGTATTGAAGACACTTTGGTGGCTGACCTGAATTTTATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG