1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gatcaatttattaatttaactttgcattagcagggtcattttcccttttgctaattattgttgccataccttctcactgtccaagtatcaacttttatagGAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGAGCAAAACCCATGCCAAGCTTCTATCAAGAGGGTCCCCCACCTAAGGTTG
species | Oryza sativa |
transcript | LOC_Os07g08790.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACGCAAGGCCTTGGAAGAGGAGAAACTAGAAGCTGAGGCAAGAAAAAAG GAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGAEST: gi|58684078|gb|CK072765.1|CK072765
genomic: AACGCAAGGCCTTGGAAGAGGAGAAACTAGAAGCTGAGGCAAGAAAAAAGgtaggttttg ... acttttatagGAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGA
EST: AACGCAAGGCCTTGGAAGAGGAGAAACTAGAAGCTGAGGCAAGAAAAAAG GAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGAEST: gi|163926966|gb|EG710208.1|EG710208
genomic: AACGCAAGGCCTTGGAAGAGGAGAAACTAGAAGCTGAGGCAAGAAAAAAGgtaggttttg ... acttttatagGAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGA
EST: AACGCAAGGCCTTGGAAGAGGAGAAACTAGAAGCTGAGGCAAGAAAAAAG GAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGAEST: gi|29668090|gb|CB664365.1|CB664365
genomic: AACGCAAGGCCTTGGAAGAGGAGAAACTAGAAGCTGAGGCAAGAAAAAAGgtaggttttg ... acttttatagGAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGA
EST: AACGCAAGGCCTTGGAAGAGGAGAAACTAGAAGCTGAGGCAAGAAAAAAG GAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGA
genomic: AACGCAAGGCCTTGGAAGAGGAGAAACTAGAAGCTGAGGCAAGAAAAAAGgtaggttttg ... acttttatagGAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGA
ttttgctaattattgttgccataccttctcactgtccaagtatcaacttttatagGAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGAGCAAAACCCATGCCAAGCTTCTATCAAGAGGGTCCCCCACCTAAGGTTG
ttctcac putative branch site (score: 45)
cttttat putative PPT
tatcaacttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatcaatttattaatttaactttgcattagcagggtcattttcccttttgctaattattgttgccataccttctcactgtccaagtatcaacttttatagGAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGAGCAAAACCCATGCCAAGCTTCTATCAAGAGGGTCCCCCACCTAAGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - -ctttgca
- - - - - - - - - - - - - - - - - - - - - - cttttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgcc