1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacttttgttcctaccactattcttacttcacctgaattagttcctttcatcacaagttttggtcaagaaggaacacaaatgtttataccttgacattctgttcccttttctgtttgggtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGTCCACTACGAGGACATGGGCATCCCTAAAGATGTCGCCAAGGTGGGTGT
species | Oryza sativa |
transcript | LOC_Os07g08760.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|86495790|gb|CI138423.1|CI138423
genomic: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|86494162|gb|CI136795.1|CI136795
genomic: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|30226837|gb|CB964729.1|CB964729
genomic: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|14981939|gb|BI306617.1|BI306617
genomic: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|86503157|gb|CI145790.1|CI145790
genomic: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|29659876|gb|CB656151.1|CB656151
genomic: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|29674883|gb|CB671158.1|CB671158
genomic: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: TATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|30228065|gb|CB965957.1|CB965957
genomic: TATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|23512848|gb|BU672864.1|BU672864
genomic: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|29662657|gb|CB658932.1|CB658932
genomic: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: TATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|29621755|gb|CB626766.1|CB626766
genomic: TATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGAATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|3763435|gb|AU030187.1|AU030187
genomic: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|29686576|gb|CB682851.1|CB682851
genomic: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|30228719|gb|CB966609.1|CB966609
genomic: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|29612780|gb|CB617793.1|CB617793
genomic: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGAATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|29686577|gb|CB682852.1|CB682852
genomic: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGEST: gi|29659938|gb|CB656213.1|CB656213
genomic: AAAACCAAGGCGTGTGGAACTGTATTTCTCAAGTTGGCGTATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
EST: TATTAGAGCAG TTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
genomic: TATTAGAGCAGgtaacttttg ... gtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGG
acacaaatgtttataccttgacattctgttcccttttctgtttgggtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGTCCACTACGAGGACATGGGCATCCCTAAAGATGTCGCCAAGGTGGGTGT
gggtaac putative branch site (score: 13)
aatgtttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttttgttcctaccactattcttacttcacctgaattagttcctttcatcacaagttttggtcaagaaggaacacaaatgtttataccttgacattctgttcccttttctgtttgggtaaccacagTTCAATCACCGAAACAAGATGGACAGCAATCCGCATGTGAAGTAACGCTGGTCCACTACGAGGACATGGGCATCCCTAAAGATGTCGCCAAGGTGGGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG