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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagttcttttgtgttgatgcatttatctttgttcacattcatatcggtaagttgtggttgtgccactcagGATTTGGTGATGATGCCTAAGCGGAGAGGTGGAAGGGATAAAGATATCCTTTCTCACAGCGAGTGGCTGAATACTGTTCAGGCAGAACCTGATGTTATCT

Basic information

species Oryza sativa
transcript LOC_Os07g07194.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g07194.2 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G435034_T01 (Zea mays), 3'ss of exon 3
----------------gtatagttcttttgtgttgatgcatttatctttgttca-------cattcatatcggtaag--ttgtggttgtgcc--actcagGATTTGGTGATGATGCCTAAGCGGAGAGGTGGAAGGGATAAAGATATCCTTTCTCACAGCGAGTGGCTGAATACTGTTCAGGCAGAACCTGATGTTATCT
                 |  | | ||   |    ||  ||||||| || | | |       | || |    | ||    || | ||||  ||  |||||||||||||||||||||| |||||| |||||||| |||||||||||     | ||||| || |||||||| ||||||||||| ||||| |||||||||| ||
ctttgtgttcataatatttcattactcaagcaaagaatcatttatattagcttagctggatcttttagcatgatacacatttttgttggccctaactcagGATTTGGTGATGATGCTTAAGCGAAGAGGTGGGAGGGATAAAGAATCTATATCTCATAGTGAGTGGCTTAATACTGTTCAAGCAGAGCCTGATGTTACCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgcatttatctttgttcacattcatatcggtaagttgtggttgtgccactcagGATTTGGTGATGATGCCTAAGCGGAGAGGTGGAAGGGATAAAGATATCCTTTCTCACAGCGAGTGGCTGAATACTGTTCAGGCAGAACCTGATGTTATCT
 tgttgat  putative branch site (score: 4)
     atttatcttt  TA-rich tract