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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaatacatacacacacacacatcgatctatcgatcgatcggtacatttgtttatgtactgcacatttccttactgaaaagtacacattttgcattggtgagaaagatatacgtacgtaaattcagaagaagaagagaaaattcagaataaaaatttgtacatgtgttttttggtttgcttatatgcagGCATCATCAGCACGGACGGTGGCAGGCACGCATCGGCCGAGTCTCCGGCAACAAGGACCTCTACCTCGGCACTTTCA

Basic information

species Oryza sativa
transcript LOC_Os07g03250.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g03250.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G008234_T01 (Zea mays), 3'ss of exon 4
gtaacaatacatacacacacacacatcgatctatcgatcgatcggtacatttgtttatgtactgcacatttccttactgaaaagtacacattttgcattggtgagaaagatatacgtacgtaaattcagaagaagaagagaaaattcagaataaaaatttgtacatgtgttttttggtttgcttatatgcagGCATCATCAGCACGGACGGTGGCAGGCACGCATCGGCCGAGTCTCCGGCAACAAGGACCTCTACCTCGGCACTTTCA
                                                                                                                            |    || || || |    | |  | ||  |    || |  ||    |    |  ||  |  ||||||||| || |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
---------------------------------------------------------------------------------------------------------------------------gtctgaaacaacaacaactgaat-gggatcgagcaatgcaagtgacgatgactgactgaatgaatgcagGCACCACCAGCACGGGCGGTGGCAGGCGCGCATCGGCCGCGTCTCCGGCAACAAGGACCTCTACCTCGGCACCTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58686395|gb|CK075082.1|CK075082
EST:     GCTTCCATGTACCGTGGTGTCACAAG                         GCATCATCAGCACGGACGGTGGCAGGCACGCATCGGCCGAGTCTCCGGCAA
genomic: GCTTCCATGTACCGTGGTGTCACAAGgtaacaatac ... ttatatgcagGCATCATCAGCACGGACGGTGGCAGGCACGCATCGGCCGAGTCTCCGGCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagaaaattcagaataaaaatttgtacatgtgttttttggtttgcttatatgcagGCATCATCAGCACGGACGGTGGCAGGCACGCATCGGCCGAGTCTCCGGCAACAAGGACCTCTACCTCGGCACTTTCA
                                        tttgctt  CT-rich tract
     aattcagaataaaaat  TA-rich tract