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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttcttcccctttcttttattttcaatcatgctgtttgcataaaaatgtagcatttatactatctgtattcagctttgatgttattttttcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTTAGTGAAGGAAACATAAAGGAACTTCTCAAATTCTGCTTCCATGAGAACT

Basic information

species Oryza sativa
transcript LOC_Os07g01760.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g01760.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM5G840582_T01 (Zea mays), 3'ss of exon 6
-atttcttcccctttcttttattttcaatcatgctgtttgcataaaaatgta-gcatttatactatctgtattcagctttgatgttattttttcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTTAGTGAAGGAAACATAAAGGAACTTCTCAAATTCTGCTTCCATGAGAACT
  |      | |||| |   ||   |  |||     | | |||| | ||||| ||||| || |   || |  |||  |       |    |    | | ||||||||||| | ||||||||| || |||||||| || |||||||| ||||||||||||| ||| |||| ||||||| |   ||  |||| |||||| ||||
tgtcgtgaacactttgtgacatgggct-tcaaataatgtacatacatatgtatgcattcattccg-ctctgatcatttcccccccttacctacgatgcttagGTTCGAGCGACGGTGATTATAAATCCAGGAAATCCCACTGGCCAGTGCCTTAGTGAAGCAAATATAAGGGAACTTGTGCGATATTGCTACCATGAAAACT

upper sequence: LOC_Os07g01760.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA02G04320.3 (Glycine max), 3'ss of exon 7
atttcttcccctttcttttattttcaatcatgctgtttgcataaaaatgtagcatttatactatctgtattcagctttgatgttat----tttttcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTTAGTGAAGGAAACATAAAGGAACTTCTCAAATTCTGCTTCCATGAGAACT
  |||||     ||||||   |||   |||     ||| | ||  |||  |     |    ||| || ||  |||    |  | ||    ||  | ||   ||||||  |||||||||||| || || || |||||||||||||| ||||||||||||||||  ||  |||  ||  || |  |||||||||  || || || |
--ttcttatatgttctttgtattt--gtcaaaaccttttcttatcaattcatgtaatgctttatttgaatgaagcaacaaaatcataaatttaattttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTAGTGAAGCTAATCTAAGAGAGGTTTTGCAATTCTGCTATCAAGAAAATT

upper sequence: LOC_Os07g01760.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA01G03260.3 (Glycine max), 3'ss of exon 7
atttcttcccctttcttttattttcaatcatgctgtttgcataaaaatgtagcatttatactatctgtattcagctttgatgttat----tttttcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTTAGTGAAGGAAACATAAAGGAACTTCTCAAATTCTGCTTCCATGAGAACT
  |||||    | | | |  || ||||      |  ||   ||   |||||    ||    ||| || ||  |||    |  | ||    ||  | ||   ||||||  |||||||||||| || || || |||||||||||||| ||||||||||||||||  ||  |||  ||  || |  ||||||| |  || || || |
ccttcttatgttctttgtatttgtcaaaatcttttcttatctattcatgtaatgctt----tatttgaatgaagcaacaaaatcataaatttaattttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTAGTGAAGCTAATCTAAGAGAGGTTTTGCAATTCTGTTATCAAGAAAATT

upper sequence: LOC_Os07g01760.1 (Oryza sativa), 3'ss of exon 5
lower sequence: AT1G70580.2 (Arabidopsis thaliana), 3'ss of exon 7
atttcttcccctttcttttattttcaatcatgctgtttgcataaaaatgtagcatttatactatctgtat-tcagctttgatgttattttttcttccata-----------gGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTTAGTGAAGGAAACATAAAGGAACTTCTCAAATTCTGCTTCCATGAGAACT
   |     |  |||   ||||||     |  |||||     | |    |    |||||   |||| ||  || ||| | || ||  ||||| |  ||||           |||  | |||||||||||||| ||||| |||||||| |||||||| || ||||| ||||  |||||||  ||  | ||    ||||| |   ||||||  |
--gttaatactcttccactatttttctcgaaactgttgatgcagaggctt---ttttatgacatctttacctctgctcttatttttgtttttttcacatatggtaaatgcagGTAAGGGCAATGGTGATTATTAACCCCGGAAACCCAACTGGCCAGTGTCTTAGCGAAGCTAACATAAGAGAGATACTACGGTTCTGTTGTGATGAGAGAT

upper sequence: LOC_Os07g01760.1 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv00s0225g00130.t01 (Vitis vinifera), 3'ss of exon 7
atttcttcccctttcttttattttcaatcatgctgtttgcataaaaatgtagca-tttatactatc-tgtattcagc-tttgatgttattttttcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTTAGTGAAGGAAACATAAAGGAACTTCTCAAATTCTGCTTCCATGAGAACT
  |||||    | | | || |  |        ||| || |    |  | | | | ||  |  ||||   || |||   | | || |  |    | |     |||| ||||||||||||||||| ||||| ||||| |||||||| || || ||||||||||  ||  |||| ||| |  |  | ||||| | ||| || ||||
--ttctttgggtctttgttttcattggctgaactgcttactgttatttttggaaattctttttatcacctagtcaatatcttatatagtcaaatgtgat-cagGTCCGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTTAGTGAAGCCAATTTAAAAGAAATATTGCACTTCTGTTACCAAGAAAACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29615657|gb|CB620669.1|CB620669
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|29671704|gb|CB667979.1|CB667979
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|58611970|gb|CK039682.1|CK039682
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|29614592|gb|CB619605.1|CB619605
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|33799763|gb|CF325747.1|CF325747
EST:     TCGTCAATCTTCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|29684690|gb|CB680965.1|CB680965
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|33381769|gb|CF197112.1|CF197112
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|58589507|gb|CF987815.1|CF987815
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCC
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCC
EST: gi|29616796|gb|CB621808.1|CB621808
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATNCA-CCCAGGAAACCCTACT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTAT-CAACCCAGGAAACCCTACT
EST: gi|29645692|gb|CB650699.1|CB650699
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|33381143|gb|CF196486.1|CF196486
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|13420573|gb|AU174663.1|AU174663
EST:     GGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: GGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|13420574|gb|AU174664.1|AU174664
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|29615352|gb|CB620364.1|CB620364
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|29615840|gb|CB620852.1|CB620852
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCCATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|29615822|gb|CB620834.1|CB620834
EST:     TCCTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|58693367|gb|CK082054.1|CK082054
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGT
EST: gi|29676307|gb|CB672582.1|CB672582
EST:     TCGTCGATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|33381689|gb|CF197032.1|CF197032
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|29616434|gb|CB621446.1|CB621446
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCNCA-TGCCT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGC-CAATGCCT
EST: gi|33801487|gb|CF326616.1|CF326616
EST:     GACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: GACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|29614424|gb|CB619437.1|CB619437
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|88357956|gb|CI650692.1|CI650692
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|58588206|gb|CF986514.1|CF986514
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|58693563|gb|CK082250.1|CK082250
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCCAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGA
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGA
EST: gi|33381833|gb|CF197176.1|CF197176
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|33675257|gb|CF303496.1|CF303496
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|29614163|gb|CB619176.1|CB619176
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|38477834|gb|CF961967.1|CF961967
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|88342691|gb|CI657185.1|CI657185
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|33799684|gb|CF325705.1|CF325705
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
EST: gi|29689279|gb|CB685554.1|CB685554
EST:     TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACT                         GTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT
genomic: TCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 66 (upstream exon), 70 (downstream exon)
Score: 228

TTCTCTCGTGCCATACTACTTAGAAGAAGAGGCTAACTGGGGACTTGACTTCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttt ... tcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTTAGTGAAGGAAACATAAAGGAACTTCTCAAATTCTGCTTCCATGAGAACT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtagcatttatactatctgtattcagctttgatgttattttttcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTTAGTGAAGGAAACATAAAGGAACTTCTCAAATTCTGCTTCCATGAGAACT
                             ctttgat  putative branch site (score: 228)
                                   tgttattttttcttcc  CT-rich tract
                              tttgatgttatttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atttcttcccctttcttttattttcaatcatgctgtttgcataaaaatgtagcatttatactatctgtattcagctttgatgttattttttcttccatagGTTCGAGCAATGGTGATTATCAACCCAGGAAACCCTACTGGCCAATGCCTTAGTGAAGGAAACATAAAGGAACTTCTCAAATTCTGCTTCCATGAGAACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - -tgcataa
- - - - - - - - - - - - - - - - - - - - - - - -tgtagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgatg