1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatattctcatgccgttggttgtataagtacttaggtaaacctgcttggcttagtaaactgacaattttgtaattttatttgtttccataaaccttacagAACCAGAAGTGTGTTCCTCTAGAGGACCTTGCCGCAGAGTTCAGGATGAGAACACAG
species | Oryza sativa |
transcript | LOC_Os07g01320.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACAAGATGATGGCCAGGGTTTGCTCCACAATTTTGTAGAGTACATCAAG AACCAGAAGTGTGTTCCTCTAGAGGACCTTGCCGCAGAGTTCAGGATGAGAEST: gi|58596966|gb|CK007494.1|CK007494
genomic: CACAAGATGATGGCCAGGGTTTGCTCCACAATTTTGTAGAGTACATCAAGgtactcctct ... aaccttacagAACCAGAAGTGTGTTCCTCTAGAGGACCTTGCCGCAGAGTTCAGGATGAGA
EST: CACAAGATGATGGCCAGGGTTTGCTCCACAATTTTGTAGAGTACATCAAG AACCAGAAGTGTGTTCCTCTAGAGGACCTTGCCGCAGAGTTCAGGATGAGAEST: gi|29687912|gb|CB684187.1|CB684187
genomic: CACAAGATGATGGCCAGGGTTTGCTCCACAATTTTGTAGAGTACATCAAGgtactcctct ... aaccttacagAACCAGAAGTGTGTTCCTCTAGAGGACCTTGCCGCAGAGTTCAGGATGAGA
EST: CACAAGATGATGGCCAGGGGTTGCTCCACAATTTTGTAGAGTACATCAAG AACCAGAAGTGTGTTCCTCTAGAGGACCTTGCCGCAGAGTTCAGGATGAGA
genomic: CACAAGATGATGGCCAGGGTTTGCTCCACAATTTTGTAGAGTACATCAAGgtactcctct ... aaccttacagAACCAGAAGTGTGTTCCTCTAGAGGACCTTGCCGCAGAGTTCAGGATGAGA
ttggcttagtaaactgacaattttgtaattttatttgtttccataaaccttacagAACCAGAAGTGTGTTCCTCTAGAGGACCTTGCCGCAGAGTTCAGGATGAGAACACAG
aactgac putative branch site (score: 24)
aattttgtaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatattctcatgccgttggttgtataagtacttaggtaaacctgcttggcttagtaaactgacaattttgtaattttatttgtttccataaaccttacagAACCAGAAGTGTGTTCCTCTAGAGGACCTTGCCGCAGAGTTCAGGATGAGAACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - catgccg
- - - - - - - - - - - - - - - - - - - - cctgctt