1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atttaatgtgtgctatggtcgattttgtttttgtcatttatctgccagaatgaataaacctgcggttgcatattatctgactaaaacactttcattccagGCGCATCCGTGATGAACTCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAG
species | Oryza sativa |
transcript | LOC_Os06g49890.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAAACCTTGAAAGAGG GCGCATCCGTGATGAACTCGCCAAGCAGAATGAGGAAACTACAGAACTCACEST: gi|27577426|gb|CB000121.1|CB000121
genomic: TAAACCTTGAAAGAGGgtaagattta ... ttcattccagGCGCATCCGTGATGAACTCGCCAAGCAGAATGAGGAAACTACAGAACTCAC
EST: ATTGACAAGGTCACTGCAGGTCAGCGGCTGGATCTAAACCTTGAAAGAGG GCGCATCCGTGATGAACTCGCCAAGCAGAATGAGGAAACTACAGAACTCACEST: gi|44665000|gb|CR278434.1|CR278434
genomic: ATTGACAAGGTCACTGCAGGTCAGCGGCTGGATCTAAACCTTGAAAGAGGgtaagattta ... ttcattccagGCGCATCCGTGATGAACTCGCCAAGCAGAATGAGGAAACTACAGAACTCAC
EST: GCGGCTGGATCTAAACCTTGAAAGAGG GCGCATCCGTGATGAACTCGCCAAGCAGAATGAGGAAACTACAGAACTCAC
genomic: GCGGCTGGATCTAAACCTTGAAAGAGGgtaagattta ... ttcattccagGCGCATCCGTGATGAACTCGCCAAGCAGAATGAGGAAACTACAGAACTCAC
cagaatgaataaacctgcggttgcatattatctgactaaaacactttcattccagGCGCATCCGTGATGAACTCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAG
gactaaa putative branch site (score: 19)
ctttcattcc putative PPT
atattatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttaatgtgtgctatggtcgattttgtttttgtcatttatctgccagaatgaataaacctgcggttgcatattatctgactaaaacactttcattccagGCGCATCCGTGATGAACTCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAG
- - - - - tgctatg
- - - - - - - - - - - - - gtttttg
- - - - - - - - - - - - - - - - - - - - -ctgccag
- - - - - - - - - - - - - - - - - - - - - - - - - -gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actaaaa