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gtattgtgcctgctaacctgttataaaatctgagcatgtctcttttcaagttttatcctgtacatagataaattacattggtcatttgaatagGTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCT
species | Oryza sativa |
transcript | LOC_Os06g45120.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCCTGCTCTTGACAAAGATCAGTTGTGGGATTTTGAGCCAAAGAAGCTAG GTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCTEST: gi|58597715|gb|CK008243.1|CK008243
genomic: CCCTGCTCTTGACAAAGATCAGTTGTGGGATTTTGAGCCAAAGAAGCTAGgtattgtgcc ... atttgaatagGTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCT
EST: CCCTGCTCTTGACAAAGATCAGTTGTGGGATTTTGAGCCAAAGAAGCTAG GTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCEST: gi|29656411|gb|CB652686.1|CB652686
genomic: CCCTGCTCTTGACAAAGATCAGTTGTGGGATTTTGAGCCAAAGAAGCTAGgtattgtgcc ... atttgaatagGTGTTGGAGATGCCATCACTGGTGGAGATCTATATGC
EST: CCCTGCTCTTGACAAAGATCAGTTGTGGGATTTTGAGCCAAAGAAGCTAG GTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCTEST: gi|29620942|gb|CB625953.1|CB625953
genomic: CCCTGCTCTTGACAAAGATCAGTTGTGGGATTTTGAGCCAAAGAAGCTAGgtattgtgcc ... atttgaatagGTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCT
EST: CCCTGCTCTTGACAAAGATCAGTTGTGGGATTTTGAGCCAAAGAAGCTAG GTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCTEST: gi|29634503|gb|CB639512.1|CB639512
genomic: CCCTGCTCTTGACAAAGATCAGTTGTGGGATTTTGAGCCAAAGAAGCTAGgtattgtgcc ... atttgaatagGTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCT
EST: CCCTGCTCTTGACAAAGATCAGTTGTGGGATTTTGAGCCAAAGAAGCTAG GTGTTGGAGATGCEST: gi|88256210|gb|CI358598.1|CI358598
genomic: CCCTGCTCTTGACAAAGATCAGTTGTGGGATTTTGAGCCAAAGAAGCTAGgtattgtgcc ... atttgaatagGTGTTGGAGATGC
EST: CCCTGCTCTTGACAAAGATCAGTTGTGGGATTTTGAGCCAAAGAAGCTAG GTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCT
genomic: CCCTGCTCTTGACAAAGATCAGTTGTGGGATTTTGAGCCAAAGAAGCTAGgtattgtgcc ... atttgaatagGTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCT
tctcttttcaagttttatcctgtacatagataaattacattggtcatttgaatagGTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCT
atagataaattacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtgcctgctaacctgttataaaatctgagcatgtctcttttcaagttttatcctgtacatagataaattacattggtcatttgaatagGTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC