1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatcgtgtcgtggacttctaacagaaattccttttacatatttttggtttccattttcctgtctctgtctgtttatgcctagaaaaagaagcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATATATATGTAAATAATGCATCCATTGTGAAGAATGCCAGTATATTTATTG
species | Oryza sativa |
transcript | LOC_Os06g43860.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTATEST: gi|29636438|gb|CB641447.1|CB641447
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGGTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29659496|gb|CB655771.1|CB655771
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29667364|gb|CB663639.1|CB663639
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29657257|gb|CB653532.1|CB653532
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29640636|gb|CB645645.1|CB645645
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|58692037|gb|CK080724.1|CK080724
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|30226666|gb|CB964558.1|CB964558
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTATEST: gi|58693265|gb|CK081952.1|CK081952
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|58695467|gb|CK084154.1|CK084154
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTATEST: gi|29645298|gb|CB650305.1|CB650305
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29615078|gb|CB620091.1|CB620091
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTATEST: gi|29678380|gb|CB674655.1|CB674655
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29667393|gb|CB663668.1|CB663668
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29660832|gb|CB657107.1|CB657107
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGGTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATTTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|86900371|gb|CI296414.1|CI296414
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29667392|gb|CB663667.1|CB663667
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29645255|gb|CB650262.1|CB650262
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29645297|gb|CB650304.1|CB650304
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29657258|gb|CB653533.1|CB653533
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|14571398|gb|BI118766.1|BI118766
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGGAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTATEST: gi|29645222|gb|CB650229.1|CB650229
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|89198793|gb|CI003530.1|CI003530
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: AAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|38483171|gb|CF966973.1|CF966973
genomic: AAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29659495|gb|CB655770.1|CB655770
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29618507|gb|CB623519.1|CB623519
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTATEST: gi|29679811|gb|CB676086.1|CB676086
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29686228|gb|CB682503.1|CB682503
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|14571386|gb|BI118754.1|BI118754
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTATEST: gi|89170914|gb|CI040191.1|CI040191
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29637144|gb|CB642153.1|CB642153
genomic: TGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTTGTTGGAGAAGAAGTATEST: gi|29640635|gb|CB645644.1|CB645644
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29663219|gb|CB659494.1|CB659494
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29667365|gb|CB663640.1|CB663640
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|29640783|gb|CB645790.1|CB645790
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATEST: gi|30229571|gb|CB967462.1|CB967462
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTATEST: gi|58689485|gb|CK078172.1|CK078172
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG GTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGAGAAGAAGTATEST: gi|29669194|gb|CB665469.1|CB665469
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTAT
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG AEST: gi|29669194|gb|CB665469.1|CB665469
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcag-
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG AEST: gi|29669194|gb|CB665469.1|CB665469
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcag-
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG AEST: gi|29657867|gb|CB654142.1|CB654142
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... agcaatgcag-
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGAAGCAATGCAG
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGC-A-AG----AGAA--AA---AGgtatcgtgtc ...
tggtttccattttcctgtctctgtctgtttatgcctagaaaaagaagcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATATATATGTAAATAATGCATCCATTGTGAAGAATGCCAGTATATTTATTG
tagaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcgtgtcgtggacttctaacagaaattccttttacatatttttggtttccattttcctgtctctgtctgtttatgcctagaaaaagaagcaatgcagGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATATATATGTAAATAATGCATCCATTGTGAAGAATGCCAGTATATTTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA