1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatcgtgtcgtggacttctaacagaaattccttttacatatttttggtttccattttcctgtctctgtctgtttatgcctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATATATATGTAAATAATGCATCCATTGTGAAGAATGCCAG
species | Oryza sativa |
transcript | LOC_Os06g43860.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG AAGCAATGCAGGTGATGGCAAGGCCGAGCAATTTTGGTAGAACGTGGTTGGEST: gi|29679811|gb|CB676086.1|CB676086
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGC-A-AG----AG AA--AA---AGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGEST: gi|38565817|gb|CK085270.1|CK085270
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG AAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGEST: gi|29663219|gb|CB659494.1|CB659494
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGC-A-AG----AG AA--AA---AGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGEST: gi|38475492|gb|CF959625.1|CF959625
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG AAGCAATGCAGGTGATGGCAAGGCCGAGCAAGCTTGGTAGAATGTGGTTGGEST: gi|29645298|gb|CB650305.1|CB650305
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGC-A-AG----AG AA--AA---AGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGEST: gi|38565678|gb|CK085131.1|CK085131
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG AAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGEST: gi|29657867|gb|CB654142.1|CB654142
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG AAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGEST: gi|29659496|gb|CB655771.1|CB655771
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGC-A-AG----AG AA--AA---AGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGEST: gi|58693265|gb|CK081952.1|CK081952
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG --G---TG-A--TG--G-CAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGEST: gi|29645222|gb|CB650229.1|CB650229
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGC-A-AG----AG AA--AA---AGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGEST: gi|29637144|gb|CB642153.1|CB642153
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGC-A-AG----AG AA--AA---AGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTTGTTGGEST: gi|29657258|gb|CB653533.1|CB653533
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGC-A-AG----AG AA--AA---AGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGEST: gi|31818558|gb|CD645554.1|CD645554
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG AAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGEST: gi|29669194|gb|CB665469.1|CB665469
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG AAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGEST: gi|29645255|gb|CB650262.1|CB650262
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGC-A-AG----AG AA--AA---AGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGEST: gi|29667364|gb|CB663639.1|CB663639
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG --G---TG-A--TG--G-CAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGEST: gi|29667365|gb|CB663640.1|CB663640
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGC-A-AG----AG AA--AA---AGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGEST: gi|109974476|gb|DT806929.1|DT806929
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG ATGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAATGTGGTTGGEST: gi|58695467|gb|CK084154.1|CK084154
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
EST: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAG --G---TG-A--TG--G-CAAGGCCGAGCAATCTTGGTAGAATGTGGTTGG
genomic: TGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtc ... ctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGG
ttacatatttttggtttccattttcctgtctctgtctgtttatgcctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATATATATGTAAATAATGCATCCATTGTGAAGAATGCCAG
tattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcgtgtcgtggacttctaacagaaattccttttacatatttttggtttccattttcctgtctctgtctgtttatgcctagaaaaagAAGCAATGCAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGGTTGGAGAAGAAGTATATATATGTAAATAATGCATCCATTGTGAAGAATGCCAG
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