1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttttggtctaagtccgtgtgcctgatatgtctgattaggcgtttgaacgcttgtttctcatattcttgtgagctgattgaggatgtttatttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG
species | Oryza sativa |
transcript | LOC_Os06g43570.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|86866304|gb|CI336928.1|CI336928
genomic: CATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATT-GTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCCGAGTCTCTATAEST: gi|86869859|gb|CI316587.1|CI316587
genomic: GAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GGAGAGGACAATGAGCCA-GTATTT-TACCAT-GACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|27578275|gb|CB000970.1|CB000970
genomic: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|86887201|gb|CI326016.1|CI326016
genomic: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|33658927|gb|CF281540.1|CF281540
genomic: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|33663267|gb|CF294234.1|CF294234
genomic: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GCATTGGTGCAAA GGAACTAGGTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|88270346|gb|CI385604.1|CI385604
genomic: GCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: -GAGAGGACAATGAGCCATTTATTTGTACCAT-GACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTT-TATC-GGGACAGCATCGGAGTCTCTATAEST: gi|55432675|gb|CV729358.1|CV729358
genomic: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: AGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|88519731|gb|CI447385.1|CI447385
genomic: AGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|218483130|gb|FG953131.1|FG953131
genomic: GACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|55413998|gb|CV726374.1|CV726374
genomic: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|33684761|gb|CF313000.1|CF313000
genomic: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|88510953|gb|CI438459.1|CI438459
genomic: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTTTATAEST: gi|88960027|gb|CI381905.1|CI381905
genomic: GAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: ACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|33660368|gb|CF291335.1|CF291335
genomic: ACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|29666365|gb|CB662640.1|CB662640
genomic: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|88486810|gb|CI424081.1|CI424081
genomic: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: ACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|25806911|gb|CA762872.1|CA762872
genomic: ACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|58683923|gb|CK072610.1|CK072610
genomic: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|86420774|gb|CI056763.1|CI056763
genomic: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|88835147|gb|CI370450.1|CI370450
genomic: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: TTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|33660483|gb|CF291450.1|CF291450
genomic: TTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATAEST: gi|33681923|gb|CF310162.1|CF310162
genomic: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
EST: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
genomic: GGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatca ... ttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATA
aacgcttgtttctcatattcttgtgagctgattgaggatgtttatttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG
agctgat putative branch site (score: 16)
tttatttct putative PPT
atgtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttggtctaagtccgtgtgcctgatatgtctgattaggcgtttgaacgcttgtttctcatattcttgtgagctgattgaggatgtttatttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG
- - - - - - - - -gtgcctg
- - - - - - - - - - - - - atgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatt