1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgttccgcttgacatattctattgaagacactttttcctgattgtgcattgatccatttattaactaaaatttcttaacatttttagcaaatgtttaattacgctatttttctgaatgaaagATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAGTAGTGCAGATTCTTCTCCGCGTCCTGATGAACATGGTTCAGGTGTTCT
species | Oryza sativa |
transcript | LOC_Os06g43560.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCAT ATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAEST: gi|29636297|gb|CB641306.1|CB641306
genomic: AAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATgtatgttccg ... tgaatgaaagATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAA
EST: AAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCAT ATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAEST: gi|29636296|gb|CB641305.1|CB641305
genomic: AAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATgtatgttccg ... tgaatgaaagATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAA
EST: AAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCAT ATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAEST: gi|12405104|gb|AU166705.1|AU166705
genomic: AAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATgtatgttccg ... tgaatgaaagATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAA
EST: AAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCAT ATTACCAAGATTEST: gi|29625298|gb|CB630309.1|CB630309
genomic: AAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATgtatgttccg ... tgaatgaaagATTACCAAGATT
EST: AAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCAT ATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAA
genomic: AAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATgtatgttccg ... tgaatgaaagATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAA
aaatttcttaacatttttagcaaatgtttaattacgctatttttctgaatgaaagATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAGTAGTGCAGATTCTTCTCCGCGTCCTGATGAACATGGTTCAGGTGTTCT
ctatttttct CT-rich tract
ttaacatttttagcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttccgcttgacatattctattgaagacactttttcctgattgtgcattgatccatttattaactaaaatttcttaacatttttagcaaatgtttaattacgctatttttctgaatgaaagATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAGTAGTGCAGATTCTTCTCCGCGTCCTGATGAACATGGTTCAGGTGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT