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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaattcattagttctgtgcacttgcatattatgctgtatgttataaattcaactgagatcaacctgcttatcttatattttgcagTTTAATATGATCAATCCAGATACGTGAGGGAATAGAATCGATTTTGCCAGCATTCATTTCAGGCAATACGAGACTATCAGTAAATGAACATTGTAGACTG

Basic information

species Oryza sativa
transcript LOC_Os06g41780.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88388239|gb|CI627778.1|CI627778
EST:     TCGAAATCCTGGAGTTCAAG                         TTTAATATGATCAATCCAGATACGTGAGGGAATAGAATCGATTTTGCCAGC
genomic: TCGAAATCCTGGAGTTCAAGgtaaaaattc ... tattttgcagTTTAATATGATCAATCCAGATACGTGAGGGAATAGAATCGATTTTGCCAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctgtatgttataaattcaactgagatcaacctgcttatcttatattttgcagTTTAATATGATCAATCCAGATACGTGAGGGAATAGAATCGATTTTGCCAGCATTCATTTCAGGCAATACGAGACTATCAGTAAATGAACATTGTAGACTG
      tatgttataaattcaa  TA-rich tract