1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggatgtagatgcagatattaggaaaaaagtattccactgttctatgcaattctgtttgtacgaggtataatgtcccttttgcttgcctttttgtttacagCATTAAGCATGAATACAGTGCTTGGGATGACAAGAACCCTACAGTGCAAACTTGCAATGCTAACAATAAGATAACTCCTGGTAGCCACACGCCTCAAGAC
species | Oryza sativa |
transcript | LOC_Os06g37160.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCAAACTCTCCTGATGCTCGTATTGTTGGCTTCCATGTGATTCCT-GCAG CATTAAGCATGAATACAGTGCTTGGGATGACAAGAACCCTACAGTGCAAACEST: gi|58673645|gb|CK062331.1|CK062331
genomic: CCAAACTCTCCTGATGCTCGTATTGTTGGCTTCCATGTGATTCCTAGCAGgtattgtata ... ttgtttacagCATTAAGCATGAATACAGTGCTTGGGATGACAAGAACCCTACAGTGCAAAC
EST: CCAAACTCTCCTGATGCTCGTATTGTTGGCTTCCATGTGATTCCTAGCAG CATTAAGCATGAATACAGTGCTTGGGATGACAAGAEST: gi|58670643|gb|CK059329.1|CK059329
genomic: CCAAACTCTCCTGATGCTCGTATTGTTGGCTTCCATGTGATTCCTAGCAGgtattgtata ... ttgtttacagCATTAAGCATGAATACAGTGCTTGGGATGACAAGA
EST: CCAAACTCTCCTGATGCTCGTATTGTTGGCTTCCATGTGATTCCTAGCAG CATTAAGCATGAATACAGTGCTTGGGATGACAAGAACCCTACAGTGCAAACEST: gi|58598602|gb|CK009130.1|CK009130
genomic: CCAAACTCTCCTGATGCTCGTATTGTTGGCTTCCATGTGATTCCTAGCAGgtattgtata ... ttgtttacagCATTAAGCATGAATACAGTGCTTGGGATGACAAGAACCCTACAGTGCAAAC
EST: CCAAACTCTCCTGATGCTCGTATTGTTGGCTTCCATGTGATTCCTAACAG CATTAAGCATGAATACAGTGCTTGGGATGACAAGAACCCTACAGTGCAAAGEST: gi|58664351|gb|CK053037.1|CK053037
genomic: CCAAACTCTCCTGATGCTCGTATTGTTGGCTTCCATGTGATTCCTAGCAGgtattgtata ... ttgtttacagCATTAAGCATGAATACAGTGCTTGGGATGACAAGAACCCTACAGTGCAAA-
EST: CCAAACTCTCCTGATGCTCGTATTGTTGGCTTCCATGTGATTCCTAGCAG CATTAAGCATGAATACAGTGCTTGGGATGACAAGAACCCTACAGTGCAAACEST: gi|58696045|gb|CK084732.1|CK084732
genomic: CCAAACTCTCCTGATGCTCGTATTGTTGGCTTCCATGTGATTCCTAGCAGgtattgtata ... ttgtttacagCATTAAGCATGAATACAGTGCTTGGGATGACAAGAACCCTACAGTGCAAAC
EST: TGTGATTCCTAGCAG CATTAAGCATGAATACAGTGCTTGGGATGACAAGAACCCTACAGTGCAAACEST: gi|58668256|gb|CK056942.1|CK056942
genomic: TGTGATTCCTAGCAGgtattgtata ... ttgtttacagCATTAAGCATGAATACAGTGCTTGGGATGACAAGAACCCTACAGTGCAAAC
EST: CCAAACTCTCCTGATGCTCGTATTGTTGGCTTCCATGTGATTCCTAGCAG CATTAAGCATGAATACAGTGCTTGGGATGACAAGAACCCTACAGTGCAAAC
genomic: CCAAACTCTCCTGATGCTCGTATTGTTGGCTTCCATGTGATTCCTAGCAGgtattgtata ... ttgtttacagCATTAAGCATGAATACAGTGCTTGGGATGACAAGAACCCTACAGTGCAAAC
gcaattctgtttgtacgaggtataatgtcccttttgcttgcctttttgtttacagCATTAAGCATGAATACAGTGCTTGGGATGACAAGAACCCTACAGTGCAAACTTGCAATGCTAACAATAAGATAACTCCTGGTAGCCACACGCCTCAAGAC
tcccttttgcttgcct CT-rich tract
tttttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatgtagatgcagatattaggaaaaaagtattccactgttctatgcaattctgtttgtacgaggtataatgtcccttttgcttgcctttttgtttacagCATTAAGCATGAATACAGTGCTTGGGATGACAAGAACCCTACAGTGCAAACTTGCAATGCTAACAATAAGATAACTCCTGGTAGCCACACGCCTCAAGAC
- - - -gatgcag
- - - - - - - - - - -gaaaaaa
- - - - - - - - - - - - - - - - - - - - -ctatgca
- - - - - - - - - - - - - - - - - - - - - - - - - -ctgtttg