Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatatgtgggcatttggattggtcttataatctgtttcctataagtattgctgactgtgtctgtaacgaaatttcacggcaaatgaacaattgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGGGAAGACTTCCCGGTGCAGAACTACATCGTCAAGGAAGGTCAGCTCGCGA

Basic information

species Oryza sativa
transcript LOC_Os06g29180.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g29180.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G049811_T01 (Zea mays), 3'ss of exon 5
--ttatatgtgggcatttggattggtctt-ataatctgtttcctataagtattgctgactgtgtctgtaacgaaatttcacggcaaatgaacaattgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGGGAAGACTTCCCGGTGCAGAACTACATCGTCAAGGAAGGTCAGCTCGCGA
    | ||||   |   | |     | || || ||  || |    ||    ||   |    ||    | || |   ||   ||||||  |||||||  | |||||| | || || |  || |||| |||||||||||| ||||| ||||| || || ||||||||||||||||||||||||||||||||||| ||||| || |
gacgacatgtacactgatagcgcatttttcatgatgagtatttgctattcgttctcgtgcatgctgcttacta---ttgcgggcaaacaaacaattcatacagCTGCGGTATGCGGATGGTGTGAGGGACATGCTGGATAGGTATTTCAAGGGCGAGGACTTCCCGGTGCAGAACTACATCGTCAAGGAAGGCCAGCTTGCCA

upper sequence: LOC_Os06g29180.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G147714_T01 (Zea mays), 3'ss of exon 6
--ttatatgtgggcatttggattggtctt-ataatctgtttcctataagtattgctgactgtgtctgtaacgaaatttcacggcaaatgaacaattgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGGGAAGACTTCCCGGTGCAGAACTACATCGTCAAGGAAGGTCAGCTCGCGA
    | ||||   |   | |     | || || ||  || |    ||    ||   |    ||    | || |   ||   ||||||  |||||||  | |||||| | || || |  || |||| |||||||||||| ||||| ||||| || || ||||||||||||||||||||||||||||||||||| |||||||| |
gacgacatgtacactgatagcgcatttttcatgatgagtatttgctattcgttctcgtgcatgctgctgacta---ttgcgggcaaacaaacaattcatacagCTGCGGTATGCGGATGGTGTGAGGGACATGCTGGATAGGTATTTCAAGGGCGAGGACTTCCCGGTGCAGAACTACATCGTCAAGGAAGGCCAGCTCGCCA

upper sequence: LOC_Os06g29180.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G124919_T01 (Zea mays), 3'ss of exon 6
---ttatatgtgggcatttggattggtcttataatctgtttcctataagtattgctgactgtgtctgtaacgaaatttcacg-gcaaatgaacaattgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGGGAAGACTTCCCGGTGCAGAACTACATCGTCAAGGAAGGTCAGCTCGCGA
     | ||||   |   | |     | | || ||  || |    |   ||||  |    |||  ||   |  | | |  || |||||  |||||||  | |||||| | || || |  || |||| |||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||  ||       
tgacgacatgtacactgatagcacattttcatgatgagtat----ttgctattcgttctcgtgcatgctgctgactattgcgagcaaacaaacaattcatacagCTGCGGTATGCGGATGGTGTGAGGGACATGCTGGATAGGTATTTCAAAGGCGAGGACTTCCCGGTGCAGAACTACATCGTCAAGGAAGGCTAG-------

upper sequence: LOC_Os06g29180.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G362021_T01 (Zea mays), 3'ss of exon 7
--ttatatgtgggcatttggattggtctt-ataatctgtttcctataagtattgctgactgtgtctgtaacgaaatttcacggcaaatgaacaattgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGGGAAGACTTCCCGGTGCAGAACTACATCGTCAAGGAAGGTCAGCTCGCGA
    | ||||   |   | |     | || || ||  || |   |||    ||   |    ||    | || |   ||   ||||||  |||||||  | |||||| | || || |  || |||| |||||||||||| ||||| ||||| || || ||||||||||||||||||||||||||||||||||| |||||||| |
gacgacatgtacactgatagcgcatttttcatgatgagtatttgatattcgttctcgtgcatgctgctgacta---ttgcgggcaaacaaacaattcatacagCTGCGGTATGCGGATGGTGTGAGGGACATGCTGGATAGGTATTTCAAGGGCGAGGACTTCCCGGTGCAGAACTACATCGTCAAGGAAGGCCAGCTCGCCA

upper sequence: LOC_Os06g29180.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G418005_T01 (Zea mays), 3'ss of exon 4
--ttatatgtgggcatttggattggtctt-ataatctgtttcctataagtattgctgactgtgtctgtaacgaaatttcacggcaaatgaacaattgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGGGAAGACTTCCCGGTGCAGAACTACATCGTCAAGGAAGGTCAGCTCGCGA
    | ||||   |   | |     | || || ||  || |    ||    ||   |    ||    | || |   ||   ||||||  |||||||  |  || || | || || |  || |||| |||||||||||| ||||| ||||| || || ||||||||||||||||||||||||||||||||||| |||||||| |
gacgacatgtacactgatagcgcatttttcatgatgagtatttgctattcgttctcgtgcatgctgctgacta---ttgcgggcaaacaaacaattcatatagGTGCGGTATGCGGATGGTGTGAGGGACATGCTGGATAGGTATTTCAAGGGCGAGGACTTCCCGGTGCAGAACTACATCGTCAAGGAAGGCCAGCTCGCCA

upper sequence: LOC_Os06g29180.1 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv14s0066g01320.t01 (Vitis vinifera), 3'ss of exon 5
ttatatgtgggcatttggattggtcttataatctgtttcctataagtattgctgact-gtgtctgtaacgaaatttcacggcaaatga-acaat-tgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGGGAAGACTTCCCGGTGCAGAACTACATCGTCAAGGAAGGTCAGCTCGCGA
     |       |||  | |  |||| |  |    ||||  ||  | |   |  ||  ||  ||||||  | |   | ||| ||||  ||||| |  ||||| || |||||||||| ||||||||||||||||| |||||||||||||| || |||||||| ||||  ||  | |||||||||||||| || || || || |
----gtacccaagtttctacttttcttctccttcccttcccgtatttttgcttttctcatgcttgtaactca-taaaatggccaatgggacaatattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGAGAAGACTTTCCGGCACAACATTACATCGTCAAGGAGGGCCAACTAGCAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88957611|gb|CI011540.1|CI011540
EST:     GACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: GACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86488907|gb|CI131540.1|CI131540
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGTACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86823485|gb|CI256430.1|CI256430
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86431483|gb|CI085094.1|CI085094
EST:     CTAATCATGCCATGACCCCTTATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|89176514|gb|CI111553.1|CI111553
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|3762836|gb|AU029588.1|AU029588
EST:     AATCATGCCCTGACCCCTCATATCTCTGGNACTACAATTGAATGCACAG                         CTGAGATACGCAGCAGGANTGAAGGACATGCTGGACAGGTACTTCAAAGG
genomic: AATCATGCCATGACCCCTCATATCTCTGGGACTACAATTG-ATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGG
EST: gi|86850859|gb|CI338835.1|CI338835
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|29669367|gb|CB665642.1|CB665642
EST:     CTAATCATGCCATGACCCCTCATATCTTTGGGACTACAATTGATGCACAG                         CTGACATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88964909|gb|CI084907.1|CI084907
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88453120|gb|CI539303.1|CI539303
EST:     CATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACACGCTGGACAGGTACTTCAAAGGG
genomic: CATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88320784|gb|CI527936.1|CI527936
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86601912|gb|CI258588.1|CI258588
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88969801|gb|CI383303.1|CI383303
EST:     GGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: GGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86843388|gb|CI341461.1|CI341461
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88837645|gb|CI079005.1|CI079005
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88838880|gb|CI012756.1|CI012756
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|699928|gb|D46219.1|D46219
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTNAGATACGCAGCAGGAGTTAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86878152|gb|CI319499.1|CI319499
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88437722|gb|CI533679.1|CI533679
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86893803|gb|CI314856.1|CI314856
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|89176567|gb|CI111606.1|CI111606
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86874582|gb|CI318141.1|CI318141
EST:     CTAATCATCCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86413220|gb|CI067625.1|CI067625
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|3767616|gb|AU031643.1|AU031643
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGANTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|89186806|gb|CI052219.1|CI052219
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88981870|gb|CI027448.1|CI027448
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86421610|gb|CI057599.1|CI057599
EST:     ACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: ACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86874621|gb|CI318180.1|CI318180
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86893165|gb|CI313350.1|CI313350
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88845518|gb|CI084443.1|CI084443
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88848239|gb|CI086761.1|CI086761
EST:     CTAATCATGCCATGACCCCTCATATCTCT-GGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88833985|gb|CI077466.1|CI077466
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAGTTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88202523|gb|CI200878.1|CI200878
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|29659276|gb|CB655551.1|CB655551
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86252284|gb|CI056021.1|CI056021
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|29646500|gb|CB651507.1|CB651507
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88830039|gb|CI074711.1|CI074711
EST:     CTAATCATGCCATGACCCCTGATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86512338|gb|CI154971.1|CI154971
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86869188|gb|CI335755.1|CI335755
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAATGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|29666820|gb|CB663095.1|CB663095
EST:     CTAATCATGCCATGACCCCTCATATCTTTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|8335618|gb|BE040478.1|BE040478
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCGGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|14192042|gb|AU184253.1|AU184253
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|33658448|gb|CF281061.1|CF281061
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|163929537|gb|EG709304.1|EG709304
EST:     CTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|29662259|gb|CB658534.1|CB658534
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86254034|gb|CI058761.1|CI058761
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|89175257|gb|CI111776.1|CI111776
EST:     CTAATCATGCCATGACCGGTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88969399|gb|CI382937.1|CI382937
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCACCAGGAGTGAAGAACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88271610|gb|CI387663.1|CI387663
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|702431|gb|D48722.1|D48722
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTTAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86538067|gb|CI178273.1|CI178273
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88320451|gb|CI523194.1|CI523194
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88442275|gb|CI541482.1|CI541482
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88459786|gb|CI522046.1|CI522046
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88272749|gb|CI386604.1|CI386604
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88256463|gb|CI358851.1|CI358851
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86854197|gb|CI254142.1|CI254142
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|11173099|gb|AU164612.1|AU164612
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|58696127|gb|CK084814.1|CK084814
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCGGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|2311656|gb|C27811.1|C27811
EST:     CTAATCATGCCATGACCCCTCATATCTCTNGGACTACAATTGATGCACAN                         -TGAGATACGCAGCAGGAGT
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGT
EST: gi|86414768|gb|CI069171.1|CI069171
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|313079527|gb|HO213085.1|HO213085
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCGGCGGGAGTGAAGGACATGCTGGACAGGT
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGT
EST: gi|88829585|gb|CI074455.1|CI074455
EST:     CTAATCATGCCATGACCCCTTATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86823497|gb|CI256438.1|CI256438
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88264232|gb|CI368006.1|CI368006
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGGTACGCAGCAGGAGTGAAGGACATGCTGGACAGGTGCTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88265074|gb|CI368848.1|CI368848
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88413719|gb|CI528491.1|CI528491
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|29658973|gb|CB655248.1|CB655248
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|29663026|gb|CB659301.1|CB659301
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86896749|gb|CI329005.1|CI329005
EST:     GGACTACAATAGAGGCACAC                         CTGAGATACGCAGCAGGAATGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: GGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88904320|gb|CI002053.1|CI002053
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|163918002|gb|EG714772.1|EG714772
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|55409037|gb|CV721413.1|CV721413
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88850094|gb|CI091389.1|CI091389
EST:     CTAATCATGCCATGACCCCTCAAATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|89197803|gb|CI013793.1|CI013793
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86889576|gb|CI318767.1|CI318767
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGATTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86832582|gb|CI345016.1|CI345016
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88264544|gb|CI368318.1|CI368318
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGTACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88837778|gb|CI079138.1|CI079138
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|86426676|gb|CI071773.1|CI071773
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
EST: gi|88832466|gb|CI019407.1|CI019407
EST:     CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAG                         CTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG
genomic: CTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 75 (downstream exon)
Score: 262

TGTCTGGTTCCCCCAACCAGCACCAAAGGATCACCCATGGCGATACATGCCTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgtcagctttt ... attgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGGGAAGACTTCCCGGTGCAGAACTACATCGTCAAGGAAGGTCAGCTCGCGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattgctgactgtgtctgtaacgaaatttcacggcaaatgaacaattgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGGGAAGACTTCCCGGTGCAGAACTACATCGTCAAGGAAGGTCAGCTCGCGA
                        aaatttca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttatatgtgggcatttggattggtcttataatctgtttcctataagtattgctgactgtgtctgtaacgaaatttcacggcaaatgaacaattgctgcagCTGAGATACGCAGCAGGAGTGAAGGACATGCTGGACAGGTACTTCAAAGGGGAAGACTTCCCGGTGCAGAACTACATCGTCAAGGAAGGTCAGCTCGCGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - gcatttg
- - - - - - - - - - - - - - - - ctgtttc
- - - - - - - - - - - - - - - - - - - - - - - - -tgctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaatg