Sequence
atgc intronic sequence ATGC exonic sequencegtatttcctaacacctgcctttcggtgttttgtggttactcttaacttcattatcaacttttgtttcttccattagGTCCTCCCTCATATAAAAGATGCTGGCTATAATGCTATTCAATTGATTGGAATTGTGGAACACAAGGATTACTCTTCTGTTGGCTATAAG
Basic information
species | Oryza sativa |
transcript | LOC_Os06g26234.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os06g26234.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA18G10380.1 (Glycine max), 3'ss of exon 5
------------------------------------gtatttcctaacacctgcctttcggtgttttgtggttactcttaacttcatta----tcaacttttgtttcttccat----tagGTCCTCCCTCATATAAAAGATGCTGGCTATAATGCTATTCAATTGATTGGAATTGTGGAACACAAGGATTACTCTTCTGTTGGCTATAAG
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gtttcccccctcatttctttgggttggaatttgtaactaatcaattatacatatcttcca-tgtctatatattgtaatgggctccattgaatttttacttttattatatgcacaatgcagGTGCTTCCTTACATTAAGGAAGCTGGATACAATGCCATCCAGTTGATTGGAATTGTTGAACACAAGGATTATTTTACTGTTGGTTACAGA
upper sequence: LOC_Os06g26234.1 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv19s0090g00920.t01 (Vitis vinifera), 3'ss of exon 5
---------gtatttcctaacacctgcctttcggtgttttgtggt--tactcttaacttcatta---tcaacttttgtttcttccatta--gGTCCTCCCTCATATAAAAGATGCTGGCTATAATGCTATTCAATTGATTGGAATTGTGGAACACAAGGATTACTCTTCTGTTGGCTATAAG
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gtaccttcttgattgctttatattt-ctttcttcctttctgtaatactatccacaagttattttcttttgtgttctattttcctcattacagGTCCTTCCTCATATAAAAGAAGCTGGATACAATGCAATCCAGTTGATTGGAGTTGTTGAGCACAAAGACTATTCCTCTGTAGGTTATAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27554606|gb|CA998506.1|CA998506EST: TAAGTGGATCGGAGCAAAAAATATCGTCATTTCAGGAGTTCACATCAAAT GTCCTCCCTCATATAAAAGATGCTGGCTATAATGCTATTCAATTGATTGGA
genomic: TAAGTGGATCGGAGCAAAAAATATCGTCATTTCAGGAGTTCACATCAAATgtatttccta ... cttccattagGTCCTCCCTCATATAAAAGATGCTGGCTATAATGCTATTCAATTGATTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcggtgttttgtggttactcttaacttcattatcaacttttgtttcttccattagGTCCTCCCTCATATAAAAGATGCTGGCTATAATGCTATTCAATTGATTGGAATTGTGGAACACAAGGATTACTCTTCTGTTGGCTATAAG
tcttaac putative branch site (score: 2)
cttttgtttcttccat putative PPT
ttcattat TA-rich tract