1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acttacaaagctcctggatttggttttgtttcacgtccactgtgatgattcctcttttaatgtcatattaatgtttcccttttattgttatgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGCAACCTAGAACAGACAATCCAACAAATTCTTGACATGGGTGGTGGCACC
species | Oryza sativa |
transcript | LOC_Os06g15360.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|58682592|gb|CK071279.1|CK071279
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC ---TGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|58665658|gb|CK054344.1|CK054344
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|29643232|gb|CB648239.1|CB648239
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|33654535|gb|CF277149.1|CF277149
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGNTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAEST: gi|29655833|gb|CB652108.1|CB652108
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAG-TGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTA
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|33656015|gb|CF278629.1|CF278629
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTEST: gi|58670606|gb|CK059292.1|CK059292
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGT
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|58670896|gb|CK059582.1|CK059582
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|29631166|gb|CB636175.1|CB636175
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|29669284|gb|CB665559.1|CB665559
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCTGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|29636049|gb|CB641058.1|CB641058
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCACATCTTGTTTTAAGTAGEST: gi|29673854|gb|CB670129.1|CB670129
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|218502296|gb|FG962509.1|FG962509
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|58586179|gb|CF984487.1|CF984487
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTEST: gi|700253|gb|D46544.1|D46544
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGT
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGNTGCATCAAATCTTGTTTCAGGTAGEST: gi|29657664|gb|CB653939.1|CB653939
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|117226238|gb|CT846174.1|CT846174
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|58611993|gb|CK039705.1|CK039705
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|29670071|gb|CB666346.1|CB666346
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|29668712|gb|CB664987.1|CB664987
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAAGTAGEST: gi|29658464|gb|CB654739.1|CB654739
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCTCTCCGGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AGGCTGATGCGGATGTTTACGGTCAGGCTGCATCAAATCTTGTTTCATGTAEST: gi|29632660|gb|CB637669.1|CB637669
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAG-TGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTA
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCNGATGTCTACAGTCACGCTGCATCAAATCTTGEST: gi|29643186|gb|CB648193.1|CB648193
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|29660320|gb|CB656595.1|CB656595
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|58596519|gb|CK007047.1|CK007047
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGEST: gi|29631164|gb|CB636173.1|CB636173
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGNCGGATGTCTACAGTCAGGCTGCATCAAATCTTGEST: gi|58667186|gb|CK055872.1|CK055872
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATG-CGGATGTCTACAGTCAGGCTGCATCAAATCTTG
EST: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATC AAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
genomic: TCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCTGTGACCGCATCgtaagctccc ... tgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAG
tgattcctcttttaatgtcatattaatgtttcccttttattgttatgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGCAACCTAGAACAGACAATCCAACAAATTCTTGACATGGGTGGTGGCACC
tattaat putative branch site (score: 2)
ttttaatgtcatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttacaaagctcctggatttggttttgtttcacgtccactgtgatgattcctcttttaatgtcatattaatgtttcccttttattgttatgataaacagAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGTAGCAACCTAGAACAGACAATCCAACAAATTCTTGACATGGGTGGTGGCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG