1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...tctttcatatttatctatttcttaatactaacacttatatgaacattgtgttttatccaataagattcctctataactcattcatcattcatatgtgcagATGAAAGTATATACTTAGCATATTCAGACTTCCACCCTTATGTTGTTGGAGACTTGGCTTGTACAAAGGAGCTGAACCGCTGGTTCTCGAAGCAATTTGA
species | Oryza sativa |
transcript | LOC_Os06g08730.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCATTCAGGAGATG ATGAAAGTATATACTTAGCATATTCAGACTTCCACCCTTATGTTGTTGGAGEST: gi|33675354|gb|CF303593.1|CF303593
genomic: ATCATTCAGGAGATGgtatgctctt ... atatgtgcagATGAAAGTATATACTTAGCATATTCAGACTTCCACCCTTATGTTGTTGGAG
EST: AAGAATCACTGCTACTACCCAGGAATTGGCCCATTATCATTCAGGAGATG ATGAAAGTATATACTTAGCATATTCAGACTTCCACCCTTATGTTGTTGGAGEST: gi|13896358|gb|AU182694.1|AU182694
genomic: AAGAATCACTGCTACTACCCAGGAATTGGCCCATTATCATTCAGGAGATGgtatgctctt ... atatgtgcagATGAAAGTATATACTTAGCATATTCAGACTTCCACCCTTATGTTGTTGGAG
EST: AAGAATCACTGCTACTACCCAGGAATTGGCCCATTATCATTCAGGAGATG ATGAAAGTATATACTTAGCATATTCAGACTTCCACCCTTATGTTGTTGGAG
genomic: AAGAATCACTGCTACTACCCAGGAATTGGCCCATTATCATTCAGGAGATGgtatgctctt ... atatgtgcagATGAAAGTATATACTTAGCATATTCAGACTTCCACCCTTATGTTGTTGGAG
ttgtgttttatccaataagattcctctataactcattcatcattcatatgtgcagATGAAAGTATATACTTAGCATATTCAGACTTCCACCCTTATGTTGTTGGAGACTTGGCTTGTACAAAGGAGCTGAACCGCTGGTTCTCGAAGCAATTTGA
ctataac putative branch site (score: 7)
aataagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttcatatttatctatttcttaatactaacacttatatgaacattgtgttttatccaataagattcctctataactcattcatcattcatatgtgcagATGAAAGTATATACTTAGCATATTCAGACTTCCACCCTTATGTTGTTGGAGACTTGGCTTGTACAAAGGAGCTGAACCGCTGGTTCTCGAAGCAATTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
-ctttcat
- - - - - - - - - - - - - actaaca
- - - - - - - - - - - - - - - - - - - atgaaca
- - - - - - - - - - - - - - - - - - - - - - -ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caataaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcat