1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatagatctgtgctatgtacagtaacctgcataaaagattacaaattttttgatctatcacgagctcttcagtcttgaccaactgtctccttacccatagGGTGGCTGCGACGAAGAGATTGGGCTGTTCCTGTACAGAGGCCACGCCGACGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGCGCGACC
species | Oryza sativa |
transcript | LOC_Os06g03910.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCG GGTGGCTGCGACGAAGAGATTGGGCTGTTCCTGTACAGAGGCCACGCCGACEST: gi|25801063|gb|CA757024.1|CA757024
genomic: TTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCGgtaaatgaca ... ttacccatagGGTGGCTGCGACGAAGAGATTGGGCTGTTCCTGTACAGAGGCCACGCCGAC
EST: TTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCG GGTGGCTGCGACGAAGAGATTGGGCTGTTCCTGTACAGAGGCCACGCCGACEST: gi|2442264|gb|C74035.1|C74035
genomic: TTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCGgtaaatgaca ... ttacccatagGGTGGCTGCGACGAAGAGATTGGGCTGTTCCTGTACAGAGGCCACGCCGAC
EST: TTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCG GGTGGCTGCGACGAAGAGATTGGGCTTGTTCCTGTACAGAGGCCACGC-GA
genomic: TTACTGCATTGCTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCGgtaaatgaca ... ttacccatagGGTGGCTGCGACGAAGAGATTGGGCT-GTTCCTGTACAGAGGCCACGCCGA
ttttttgatctatcacgagctcttcagtcttgaccaactgtctccttacccatagGGTGGCTGCGACGAAGAGATTGGGCTGTTCCTGTACAGAGGCCACGCCGACGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGCGCGACC
tccttac putative branch site (score: 7)
ctgtctccttaccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatagatctgtgctatgtacagtaacctgcataaaagattacaaattttttgatctatcacgagctcttcagtcttgaccaactgtctccttacccatagGGTGGCTGCGACGAAGAGATTGGGCTGTTCCTGTACAGAGGCCACGCCGACGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGCGCGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - tgctatg
- - - - - - - - - - - - acctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacgagc