1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ccgtcatgatctatcttatgaaaagaagtgacagtgacttgatctgccttatcaatggcataattttttgacatattattaacatatctggccttgacagGTTGCAATCAAGAAAATGAAGAAAAAATATTATTCATGGGAGGAGTGCATCAATCTCCGTGAAGTGAAG
species | Oryza sativa |
transcript | LOC_Os06g02550.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTG GTTGCAATCAAGAAAATGAAGAAAAAATATTATTCATGGGAGGAGTGCATCEST: gi|58695956|gb|CK084643.1|CK084643
genomic: GAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTGgtatgccact ... gccttgacagGTTGCAATCAAGAAAATGAAGAAAAAATATTATTCATGGGAGGAGTGCATC
EST: GAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTG GTTGCAATCAAGAAAATGAAGAAAAAATATTATTCATGGGAGGAGTGCATCEST: gi|29638208|gb|CB643217.1|CB643217
genomic: GAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTGgtatgccact ... gccttgacagGTTGCAATCAAGAAAATGAAGAAAAAATATTATTCATGGGAGGAGTGCATC
EST: GAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTG GTTGCAATCAAGAAAATGAAGAAAAAATATTATTCATGGGAGGAGTGCATCEST: gi|29679855|gb|CB676130.1|CB676130
genomic: GAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTGgtatgccact ... gccttgacagGTTGCAATCAAGAAAATGAAGAAAAAATATTATTCATGGGAGGAGTGCATC
EST: GAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTG GTTGCAATCAAGAAAATGAAGAAAAAATATTATEST: gi|29679854|gb|CB676129.1|CB676129
genomic: GAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTGgtatgccact ... gccttgacagGTTGCAATCAAGAAAATGAAGAAAAAATATTAT
EST: GAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTG GTTGCAATCAAGAAAATGAAGAAAAAATATTATEST: gi|58689016|gb|CK077703.1|CK077703
genomic: GAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTGgtatgccact ... gccttgacagGTTGCAATCAAGAAAATGAAGAAAAAATATTAT
EST: GAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTG GTTGCAATCAAGAAAATGAAGAAAAAATATTATTCATGGGAGGAGTGCATCEST: gi|29632166|gb|CB637175.1|CB637175
genomic: GAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTGgtatgccact ... gccttgacagGTTGCAATCAAGAAAATGAAGAAAAAATATTATTCATGGGAGGAGTGCATC
EST: GAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTG GTTGCAATCAACAAAATGAAGAAAAATTATTATTCATGGGAGGAGTGCATCEST: gi|58695198|gb|CK083885.1|CK083885
genomic: GAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTGgtatgccact ... gccttgacagGTTGCAATCAAGAAAATGAAGAAAAAATATTATTCATGGGAGGAGTGCATC
EST: GAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTG GTTGCAATCAAGAAAATGAAGAAAAAATATTATTCATGGGAGGAGTGCATC
genomic: GAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTGgtatgccact ... gccttgacagGTTGCAATCAAGAAAATGAAGAAAAAATATTATTCATGGGAGGAGTGCATC
gccttatcaatggcataattttttgacatattattaacatatctggccttgacagGTTGCAATCAAGAAAATGAAGAAAAAATATTATTCATGGGAGGAGTGCATCAATCTCCGTGAAGTGAAG
tattaac putative branch site (score: 54)
ataattttttgacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgtcatgatctatcttatgaaaagaagtgacagtgacttgatctgccttatcaatggcataattttttgacatattattaacatatctggccttgacagGTTGCAATCAAGAAAATGAAGAAAAAATATTATTCATGGGAGGAGTGCATCAATCTCCGTGAAGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG