1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cttgacttcccattccatgattttcatacattttagttctcatcttttatcgtgtgtggatcattagggttgaacctaacttagcatttttgttggatagGCTGTGAATTCTAAGAGCATGCTGGATGATTGGCAAGAGAATTTGGCTATTATAACTGCAAACAGGACGAAAGGTGATGATCTTGTAATTACGCACCTTG
species | Oryza sativa |
transcript | LOC_Os06g01650.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGTTGATGGCAATTATGGTAATTTGCATATACCCCAACGGCCGGTGGAG GCTGTGAATTCTAAGAGCATGCTGGATGATTGGCAAGAGAATTTGGCTATTEST: gi|112786498|gb|EE590877.1|EE590877
genomic: CTGTTGATGGCAATTATGGTAATTTGCATATACCCCAACGGCCGGTGGAGgtaatacata ... tgttggatagGCTGTGAATTCTAAGAGCATGCTGGATGATTGGCAAGAGAATTTGGCTATT
EST: CTGTTGATGGCAATTATGGTAATTTGCATATACCCCAACGGCCGGTGGAG GCTGTGAATTCTAAGAGCATGCTGGATGATTGGCAAGAGAATTTGGCTATTEST: gi|86884068|gb|CI311582.1|CI311582
genomic: CTGTTGATGGCAATTATGGTAATTTGCATATACCCCAACGGCCGGTGGAGgtaatacata ... tgttggatagGCTGTGAATTCTAAGAGCATGCTGGATGATTGGCAAGAGAATTTGGCTATT
EST: CTGTTGATGGTAATTATGGTAATTTGCATATACCCCAACGGCGGGTGGAG GCTGTGAATTCTAAGAGCATGCTGGATGATTGGCAAGAGAATTTGGCTATT
genomic: CTGTTGATGGCAATTATGGTAATTTGCATATACCCCAACGGCCGGTGGAGgtaatacata ... tgttggatagGCTGTGAATTCTAAGAGCATGCTGGATGATTGGCAAGAGAATTTGGCTATT
tttatcgtgtgtggatcattagggttgaacctaacttagcatttttgttggatagGCTGTGAATTCTAAGAGCATGCTGGATGATTGGCAAGAGAATTTGGCTATTATAACTGCAAACAGGACGAAAGGTGATGATCTTGTAATTACGCACCTTG
acctaac putative branch site (score: 2)
tttttgtt putative PPT
atttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgacttcccattccatgattttcatacattttagttctcatcttttatcgtgtgtggatcattagggttgaacctaacttagcatttttgttggatagGCTGTGAATTCTAAGAGCATGCTGGATGATTGGCAAGAGAATTTGGCTATTATAACTGCAAACAGGACGAAAGGTGATGATCTTGTAATTACGCACCTTG
- - - - -ccattcc
- - - - - - - - - - - - catacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacctaa