1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aggaagataaattgttcatccacttctcttttcatcaaattatagatgtcaaaaacatttgttgcactagtttagaataacattttgtctgttgacacagATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAACAATGATGCAAATCGC
species | Oryza sativa |
transcript | LOC_Os06g01260.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAG ATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGEST: gi|86259817|gb|CI065690.1|CI065690
genomic: TCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGgtttgttgta ... gttgacacagATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAG
EST: TCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAG ATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGEST: gi|88227528|gb|CI227008.1|CI227008
genomic: TCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGgtttgttgta ... gttgacacagATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAG
EST: TCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAG ATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGEST: gi|86486617|gb|CI129250.1|CI129250
genomic: TCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGgtttgttgta ... gttgacacagATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAG
EST: TCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAG ATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGEST: gi|88852298|gb|CI374066.1|CI374066
genomic: TCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGgtttgttgta ... gttgacacagATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAG
EST: TTCTTCATGATGATCTTAAACGAGAG ATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGEST: gi|29668544|gb|CB664819.1|CB664819
genomic: TTCTTCATGATGATCTTAAACGAGAGgtttgttgta ... gttgacacagATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAG
EST: TCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAG ATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGEST: gi|86425145|gb|CI070242.1|CI070242
genomic: TCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGgtttgttgta ... gttgacacagATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAG
EST: TCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAG ATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGEST: gi|88248897|gb|CI247981.1|CI247981
genomic: TCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGgtttgttgta ... gttgacacagATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAG
EST: TCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAG ATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAG
genomic: TCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGgtttgttgta ... gttgacacagATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAG
atgtcaaaaacatttgttgcactagtttagaataacattttgtctgttgacacagATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAACAATGATGCAAATCGC
tttagaataacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggaagataaattgttcatccacttctcttttcatcaaattatagatgtcaaaaacatttgttgcactagtttagaataacattttgtctgttgacacagATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAACAATGATGCAAATCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC