1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaggaattgagcacaaacaaaatctcccttctctcgcttgcctacaatttcctcatagaatctgctgcttattttcatgtttcagAGGTTGTCTGAGTACCTAGATCCTGAGATCAAGAGATGGTCAAACGGAAAGGAAGGAAATCTGCGAGCCTTGTTATCCACATTGCAATAT
species | Oryza sativa |
transcript | LOC_Os05g50370.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAAGAACATGCGTGACCTGCTGGCGCAAAGAGAGCAAGCAGAGAAACAT AGGTTGTCTGAGTACCTAGATCCTGAGATCAAGAGATGGTCAAACGGAAAGEST: gi|13420889|gb|AU174979.1|AU174979
genomic: AGAAGAACATGCGTGACCTGCTGGCGCAAAGAGAGCAAGCAGAGAAACATgtaaggaatt ... catgtttcagAGGTTGTCTGAGTACCTAGATCCTGAGATCAAGAGATGGTCAAACGGAAAG
EST: AGAAGAACATGCGTGACCTGCTGGCGCAAAGAGAGCAAGCAGAGAAACAT AGGTTGTCTGAGTACCTAGATCCTGAGATCAAGAGATGGTCAAACGGAAAGEST: gi|13420888|gb|AU174978.1|AU174978
genomic: AGAAGAACATGCGTGACCTGCTGGCGCAAAGAGAGCAAGCAGAGAAACATgtaaggaatt ... catgtttcagAGGTTGTCTGAGTACCTAGATCCTGAGATCAAGAGATGGTCAAACGGAAAG
EST: AGAAGAACATGCGTGACCTGCTGGCGCAAAGAGAGCAAGCAGAGAAACAT AGGTTGTCTGAGTACCTAGATCCTGAGATCAAGAGATGGTCAAACGGAAAGEST: gi|218480068|gb|FG963241.1|FG963241
genomic: AGAAGAACATGCGTGACCTGCTGGCGCAAAGAGAGCAAGCAGAGAAACATgtaaggaatt ... catgtttcagAGGTTGTCTGAGTACCTAGATCCTGAGATCAAGAGATGGTCAAACGGAAAG
EST: AGAAGAACATGCGTGACCTGCTGGCGCAAAGAGAGCAAGCAGAGAAACAT AGGTTGTCTGAGTACCTAGATCCTGAGATCAAGAGATGGTCAAACGGAAAG
genomic: AGAAGAACATGCGTGACCTGCTGGCGCAAAGAGAGCAAGCAGAGAAACATgtaaggaatt ... catgtttcagAGGTTGTCTGAGTACCTAGATCCTGAGATCAAGAGATGGTCAAACGGAAAG
ctctcgcttgcctacaatttcctcatagaatctgctgcttattttcatgtttcagAGGTTGTCTGAGTACCTAGATCCTGAGATCAAGAGATGGTCAAACGGAAAGGAAGGAAATCTGCGAGCCTTGTTATCCACATTGCAATAT
cttattttc CT-rich tract
ttattttcatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaattgagcacaaacaaaatctcccttctctcgcttgcctacaatttcctcatagaatctgctgcttattttcatgtttcagAGGTTGTCTGAGTACCTAGATCCTGAGATCAAGAGATGGTCAAACGGAAAGGAAGGAAATCTGCGAGCCTTGTTATCCACATTGCAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA