1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtcagtgactcgactgcatgtgcagtttaaatcaggggatttgcttccctaacatataagtttttcaactttaattcttatactgttcttttgcttccagGAATCATGTTCCCCATCAGCCATTTCACTTCACTTCAAGGGAATTCGTCACCTACTCTACTGTTAGGTGACAGCTGACTAATTTAATTCCGTGGAACCCT
species | Oryza sativa |
transcript | LOC_Os05g50360.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATGGGAGGGATACTCATATTCGACAGATCAAGATATATGGGCCAAGACC GAATCATGTTCCCCATCAGCCATTTCACTTCACTTCAAGGGAATTCGTCACEST: gi|88480372|gb|CI417643.1|CI417643
genomic: AATGGGAGGGATACTCATATTCGACAGATCAAGATATATGGGCCAAGACCgtaagttgat ... ttgcttccagGAATCATGTTCCCCATCAGCCATTTCACTTCACTTCAAGGGAATTCGTCAC
EST: TATGGGCCAAGACC GAATCATGTTCCCCATCAGCCATTTCACTTCACTTCAAGGGAATTCGTCACEST: gi|286509|gb|D15316.1|D15316
genomic: TATGGGCCAAGACCgtaagttgat ... ttgcttccagGAATCATGTTCCCCATCAGCCATTTCACTTCACTTCAAGGGAATTCGTCAC
EST: AATGGGAGGGATACTCATATTCGACAGATCAAGATATATGGGCCAAGACC GAATCATGTTCCCCATCAGCCATTTCACTTCACTTCAAGGGAATTCGTCACEST: gi|3760790|gb|C98044.1|C98044
genomic: AATGGGAGGGATACTCATATTCGACAGATCAAGATATATGGGCCAAGACCgtaagttgat ... ttgcttccagGAATCATGTTCCCCATCAGCCATTTCACTTCACTTCAAGGGAATTCGTCAC
EST: AATGGGAGGGATACTCATATTCGACAGATCAAGATATATGGNCCAAGACC GAATCATGTNCCCCATCANCCATTTCACTTCACTTCAAGGGAATTCGTCAC
genomic: AATGGGAGGGATACTCATATTCGACAGATCAAGATATATGGGCCAAGACCgtaagttgat ... ttgcttccagGAATCATGTTCCCCATCAGCCATTTCACTTCACTTCAAGGGAATTCGTCAC
tccctaacatataagtttttcaactttaattcttatactgttcttttgcttccagGAATCATGTTCCCCATCAGCCATTTCACTTCACTTCAAGGGAATTCGTCACCTACTCTACTGTTAGGTGACAGCTGACTAATTTAATTCCGTGGAACCCT
ctgttcttttgcttcc CT-rich tract
atataagtttttcaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgactcgactgcatgtgcagtttaaatcaggggatttgcttccctaacatataagtttttcaactttaattcttatactgttcttttgcttccagGAATCATGTTCCCCATCAGCCATTTCACTTCACTTCAAGGGAATTCGTCACCTACTCTACTGTTAGGTGACAGCTGACTAATTTAATTCCGTGGAACCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgtt