1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atatatattttggcgcatttgtcatgataattagatttttcacgtatcatgcacataatatagcagatccatagtccctaatgatatgtataaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGGTTCAACCGTCATTCTGATGAAGGAGAAGGTGGTGAAATTGTGTTTGGA
species | Oryza sativa |
transcript | LOC_Os05g49200.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|33795396|gb|CF323568.1|CF323568
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: GGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29664332|gb|CB660607.1|CB660607
genomic: GGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|125863426|gb|EL586708.1|EL586708
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: TATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29681831|gb|CB678106.1|CB678106
genomic: TATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29675128|gb|CB671403.1|CB671403
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|117249803|gb|CT863399.1|CT863399
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|58658759|gb|CK047439.1|CK047439
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|86908029|gb|CI298797.1|CI298797
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29657722|gb|CB653997.1|CB653997
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29687486|gb|CB683761.1|CB683761
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|58670333|gb|CK059019.1|CK059019
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGEST: gi|33682905|gb|CF311144.1|CF311144
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29643320|gb|CB648327.1|CB648327
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29660989|gb|CB657264.1|CB657264
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29627821|gb|CB632832.1|CB632832
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29660449|gb|CB656724.1|CB656724
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29677506|gb|CB673781.1|CB673781
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29673512|gb|CB669787.1|CB669787
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|218478948|gb|FG952780.1|FG952780
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29639173|gb|CB644182.1|CB644182
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|58681561|gb|CK070248.1|CK070248
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29636406|gb|CB641415.1|CB641415
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29615519|gb|CB620531.1|CB620531
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTEST: gi|29644200|gb|CB649207.1|CB649207
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGT
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|8251272|gb|AU091468.1|AU091468
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGANTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAAAACAAGGGTCTTGTCAGTGAEST: gi|86847366|gb|CI286963.1|CI286963
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGG-TCTTGTCAGTGA
EST: TGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29660445|gb|CB656720.1|CB656720
genomic: TGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|33381232|gb|CF196575.1|CF196575
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29677888|gb|CB674163.1|CB674163
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|218481767|gb|FG945139.1|FG945139
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|218486960|gb|FG945468.1|FG945468
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: TGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|29639939|gb|CB644948.1|CB644948
genomic: TGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGEST: gi|428757|gb|D24912.1|D24912
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
EST: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTG GTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
genomic: CTTGGGCTTGGATTTCAGGAAATATCCGTTGGAGATGCAGTACCTGTGTGgtaagacaac ... taaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTG
atcatgcacataatatagcagatccatagtccctaatgatatgtataaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGGTTCAACCGTCATTCTGATGAAGGAGAAGGTGGTGAAATTGTGTTTGGA
ccctaat putative branch site (score: 3)
taatgatatgtataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatatattttggcgcatttgtcatgataattagatttttcacgtatcatgcacataatatagcagatccatagtccctaatgatatgtataaatcacagGTATAAGATGGTAGAGCAAGGTCTTGTCAGTGAGCCTGTTTTCTCCTTCTGGTTCAACCGTCATTCTGATGAAGGAGAAGGTGGTGAAATTGTGTTTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA