1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ccatgttatgtagacgtgtgattgagcatcactttctgtacacatgggtcagattaaactttttatttcctgtccaatggatttgtttcaccaatttcagGGTTCAGGATGGCTGCTGAATGTGCTCGTGATGCTTTATTACAGAGGGCCATGGATAACAAGGAAGATTCAG
species | Oryza sativa |
transcript | LOC_Os05g48290.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCTGAAAAGTTGGTAAATATGAAGATACATCCAATGACAATCATTGCAG GGTTCAGGATGGCTGCTGAATGTGCTCGTGATGCTTTATTACAGAGGGCCAEST: gi|88358247|gb|CI605172.1|CI605172
genomic: AGCTGAAAAGTTGGTAAATATGAAGATACATCCAATGACAATCATTGCAGgtatatttca ... ccaatttcagGGTTCAGGATGGCTGCTGAATGTGCTCGTGATGCTTTATTACAGAGGGCCA
EST: AGCTGAAAAGTTGGTAAATATGAAGATACATCCAATGACAATCATTGCAG GGTTCANGATGGCTGCTGAATGTGCTCGTGATGCTTTATTACAGAGGGCCA
genomic: AGCTGAAAAGTTGGTAAATATGAAGATACATCCAATGACAATCATTGCAGgtatatttca ... ccaatttcagGGTTCAGGATGGCTGCTGAATGTGCTCGTGATGCTTTATTACAGAGGGCCA
gggtcagattaaactttttatttcctgtccaatggatttgtttcaccaatttcagGGTTCAGGATGGCTGCTGAATGTGCTCGTGATGCTTTATTACAGAGGGCCATGGATAACAAGGAAGATTCAG
tttcacc CT-rich tract
agattaaactttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatgttatgtagacgtgtgattgagcatcactttctgtacacatgggtcagattaaactttttatttcctgtccaatggatttgtttcaccaatttcagGGTTCAGGATGGCTGCTGAATGTGCTCGTGATGCTTTATTACAGAGGGCCATGGATAACAAGGAAGATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA