Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttgcatgaaagatcagagctgcctttcacctgctacaaattcctctttttcagagcacgatatcatactgtcatgttggcttcactctgcagGATTGGTGGTTGCTTCCTTCTGCTACCTTCAGTTCTTCCCACCACCTGCTGGTGAACAAG

Basic information

species Oryza sativa
transcript LOC_Os05g47660.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29687339|gb|CB683614.1|CB683614
EST:     GGATGACTACTGGCACCATTGGCAGGACGTGTTTACCGGTGGAATTCTTG                         GATTGGTGGTTGCTTCCTTCTGCTACCTTCAGTTC
genomic: GGATGACTACTGGCACCATTGGCAGGACGTGTTTACCGGTGGAATTCTTGgtaggtttgc ... cactctgcagGATTGGTGGTTGCTTCCTTCTGCTACCTTCAGTTC
EST: gi|25777854|gb|CA752604.1|CA752604
EST:     GGATGACTACTGGCAC-ATTGGCAGGACGTGTTTACCGGTGGAATTCTTG                         GATTGGGTGGTTGCTTCCTTCTGCTACCTTCAAT-CT-CCCAACAACTGCT
genomic: GGATGACTACTGGCACCATTGGCAGGACGTGTTTACCGGTGGAATTCTTGgtaggtttgc ... cactctgcagGATTGG-TGGTTGCTTCCTTCTGCTACCTTCAGTTCTTCCCACCACCTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcctctttttcagagcacgatatcatactgtcatgttggcttcactctgcagGATTGGTGGTTGCTTCCTTCTGCTACCTTCAGTTCTTCCCACCACCTGCTGGTGAACAAG
                                          cttcactct  CT-rich tract
                      atatcata  TA-rich tract