1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctagctacaaacgaaggatgtctatcggcattgacaattcagatatcttttgactgttagtcttcttatcttctgacaattatactcatgaacatttcagGATGAGAAGCATTATTAACCATTTGAAACAGAGCCGTGATTTCCCACGCCTTAGGATTG
species | Oryza sativa |
transcript | LOC_Os05g47630.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGCCTTAAAGAAGGACATGCCGGGCATAATGG GATGAGAAGCATTATTAACCATTTGAAACAGAGCCGTGATGTCCCACGCCTEST: gi|88239091|gb|CI240253.1|CI240253
genomic: CTGCC-TAAAGGAGGACATGGCGGGCATAATGGgtacccattc ... aacatttcagGATGAGAAGCATTATTAACCATTTGAAACAGAGCCGTGATTTCCCACGCCT
EST: TACTGCCTAAAGGAGGACATGGCGGGCATAATGG GATGAGAAGCATTATTAACCATTTGAAACAGAGCCGTGATTTCCCACGCCT
genomic: TACTGCCTAAAGGAGGACATGGCGGGCATAATGGgtacccattc ... aacatttcagGATGAGAAGCATTATTAACCATTTGAAACAGAGCCGTGATTTCCCACGCCT
tcttttgactgttagtcttcttatcttctgacaattatactcatgaacatttcagGATGAGAAGCATTATTAACCATTTGAAACAGAGCCGTGATTTCCCACGCCTTAGGATTG
ttctgac putative branch site (score: 1)
acaattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagctacaaacgaaggatgtctatcggcattgacaattcagatatcttttgactgttagtcttcttatcttctgacaattatactcatgaacatttcagGATGAGAAGCATTATTAACCATTTGAAACAGAGCCGTGATTTCCCACGCCTTAGGATTG
- - ctacaaa
- - - - - - - - - - - - - - - - - - - - - - - - -ttgactg