1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaattttacattctgatctacatacacggttagtctgaactttcagatcattgtggtcttactgctactatcttgttttgctttcctagGTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATATAACATAGGAGT
species | Oryza sativa |
transcript | LOC_Os05g46580.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTTTAGAGGAAAACTTTACTATGCTGATCTCCTTGATTTATTCAATGAG GTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCACEST: gi|58685683|gb|CK074370.1|CK074370
genomic: ACTTTAGAGGAAAACTTTACTATGCTGATCTCCTTGATTTATTCAATGAGgtaattttac ... gctttcctagGTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCAC
EST: ACTTTAGAGGAAAACTTTACTATGCTGATCTCCTTGATTTATTCAATGAG GTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCACEST: gi|41884200|gb|BX929031.1|BX929031
genomic: ACTTTAGAGGAAAACTTTACTATGCTGATCTCCTTGATTTATTCAATGAGgtaattttac ... gctttcctagGTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCAC
EST: ACTTTAGAGGAAAACTTTACTATGCTGATCTCCTTGATTTATTCAATGAG GTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTAEST: gi|58603777|gb|CK014305.1|CK014305
genomic: ACTTTAGAGGAAAACTTTACTATGCTGATCTCCTTGATTTATTCAATGAGgtaattttac ... gctttcctagGTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTA
EST: ACTTTAGAGGAAAACTTTACTATGCTGATCTCCTTGATTTATTCAATGAG GTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCACEST: gi|58608132|gb|CK036165.1|CK036165
genomic: ACTTTAGAGGAAAACTTTACTATGCTGATCTCCTTGATTTATTCAATGAGgtaattttac ... gctttcctagGTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCAC
EST: ACTTTAGAGGAAAACTTTACTATGCTGATCTCCTTGATTTATTCAATGAG GTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCAC
genomic: ACTTTAGAGGAAAACTTTACTATGCTGATCTCCTTGATTTATTCAATGAGgtaattttac ... gctttcctagGTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCAC
ctgaactttcagatcattgtggtcttactgctactatcttgttttgctttcctagGTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATATAACATAGGAGT
gtcttac putative branch site (score: 53)
tcttgttttgctttcc putative PPT
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttacattctgatctacatacacggttagtctgaactttcagatcattgtggtcttactgctactatcttgttttgctttcctagGTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATATAACATAGGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA