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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcataattgagatatttgatactagatatattgtaaacggcaaagtagcataatgctttgttgatggattaaggtctccatcacatataaaaccttggccaattgaacagGTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGATTGTAGACAAATAT

Basic information

species Oryza sativa
transcript LOC_Os05g46360.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38468858|gb|CF952989.1|CF952989
EST:     AGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGACAAGCCA                         GTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTC
genomic: AGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGACAAGCCAgtaagcataa ... aattgaacagGTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTC
EST: gi|58590993|gb|CF989301.1|CF989301
EST:     AGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGACAAGCCA                         GTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTC
genomic: AGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGACAAGCCAgtaagcataa ... aattgaacagGTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTC
EST: gi|58591325|gb|CF989633.1|CF989633
EST:     AGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGACAAGCCA                         GTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTC
genomic: AGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGACAAGCCAgtaagcataa ... aattgaacagGTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTC
EST: gi|58592728|gb|CF991036.1|CF991036
EST:     AGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGACAAGCCA                         GTTGGATTGCTAAATG
genomic: AGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGACAAGCCAgtaagcataa ... aattgaacagGTTGGATTGCTAAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgttgatggattaaggtctccatcacatataaaaccttggccaattgaacagGTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGATTGTAGACAAATAT
   tgttgat  putative branch site (score: 4)
 acatataaaa  TA-rich tract