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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaaataagtgttcccaagttttggtaagaaatttgatgattccaaagataaccttggtgtttttttttcagGGATATCAAACCAGACAATCTATTGTTAGATCGCAGTGGTCACTTGAAGCTTTCTGACTTTGGATTGTGTAAACCTTTGGATAGCAGTAATTTTCCAAAT

Basic information

species Oryza sativa
transcript LOC_Os05g43570.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g43570.3 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G375904_T01 (Zea mays), 3'ss of exon 4
gtatcaaataagtgttcccaagttttggt------aagaaatttgatgattcca----------aagataaccttggtgtttttttttcagGGATATCAAACCAGACAATCTATTGTTAGATCGCAGTGGTCACTTGAAGCTTTCTGACTTTGGATTGTGTAAACCTTTGGATAGCAGTAATTTTCCAAAT
||| || |  |||||  | | |||||  |      || ||    |||||||| |          ||  || || |    |  |||| ||||||||||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||| || ||||||||||||||||| ||||||||||| || |||
gtaccatactagtgtctctatgtttttttgtcccaaaaaagccagatgattctataatttaaataatgtatccctatgttccttttgtcagGGATATCAAACCAGATAATCTTTTGTTAGATCACAGTGGTCACCTGAAGCTTTCTGACTTCGGTTTGTGTAAACCTTTGGACAGCAGTAATTTCCCTAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttggtaagaaatttgatgattccaaagataaccttggtgtttttttttcagGGATATCAAACCAGACAATCTATTGTTAGATCGCAGTGGTCACTTGAAGCTTTCTGACTTTGGATTGTGTAAACCTTTGGATAGCAGTAATTTTCCAAAT
                             agataac  putative branch site (score: 3)
                                         tgtttttttttc  putative PPT
                                         tgttttttttt  TA-rich tract