Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgcataatcccctattgcatcttgtgtatgcataatcctccgatatacatttcgatgatgctaaaggactaaattcatctgagcttatgcattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAGGCTGAGGTAACCAAGTCCCAGAAGTCGCAGTCGAAGGGTGCCGCCCCG

Basic information

species Oryza sativa
transcript LOC_Os05g40820.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G142640_T03 (Zea mays), 3'ss of exon 4
atgcataatcccctattgcatcttgtgtatgcataatcctccgatatacatttcgatgatgctaaaggactaaattcatctgagcttatgc-attgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAGGCTGAGGTAACCAAGTCCCAGAAGTCGCAGTCGAAGGGTGCCGCCCCG
             |||  |  |  || | |  || | | |   | ||| ||  ||||| | | | |   ||    |||| ||| ||   |  |   ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| | ||||||||||||| ||||| | |||||||| | || |
------------gtatgtctgccagt-tctatattaccataacaaatagataccgatgct-caatacctctccgctcatttgaactgtcgtgaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAAGGCGGAGGTGAGCAAGTCCCAGAAGACGCAGACAAAGGGTGCGGTCCAG

upper sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G110328_T04 (Zea mays), 3'ss of exon 4
-----------------------------------------------------------atgcataatcccctattgcatcttgtgtatgcataatcct---ccgatatacattt--cgatgatgctaaaggactaaattcatctgagcttatgca-----ttgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAGGCTGAGGTAACCAAGTCCCAGAAGTCGCAGTCGAAGGGTGCCGCCCCG
                                                            ||  |  |  ||||    |     | | ||  | |   |   | || | ||| |       ||||||  |  |  |   |||| ||| |     |       | ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| | ||| ||||||| || | || |
gtatgcttgtcgattttataataaaataaagccatcatttgtgcctatgacagtggtaactgtctgttggcctaaccaacaaaatctctgagtgacatttaacagaaacacaatagatacagatgcttgat-atcaggctcatttgaacacccactgacacctttgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAGGCGAAAAAGGCTGAGGTGACCAAGTCCCAGAAGGCACAGACGAAGGGAGCGGTCCAG

upper sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G074898_T01 (Zea mays), 3'ss of exon 5
------------------------------------atgcataatcccctattgcatcttgtgtatgcataatcctccgatatacatttcgatgatgctaaaggactaaattcatctgagcttatgc--attgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAGGCTGAGGTAACCAAGTCCCAGAAGTCGCAGTCGAAGGGTGCCGCCCCG
                                         ||| |  || ||   | |||   ||  |   |  |  | | |  | |   |   | |  ||      ||| ||| ||| ||   ||  |   | ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||| ||||| |||||||||| |  | |
gtaatgtttacatcctccatttatatgcctatgacagcagctaaccatctgtttggtgttgccaataaaatctgttttgctctcgagtgttactgtacacaaacgtgcaatacatttgaactgccgctgaccttacagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAGGCGAAGAAGGCTGAGGTGTCCAAGTCCCAGAAGGCGCAGACGAAGGGTGCTGTTCAG

upper sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 5
lower sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 4
atgcataatcccctattgcatcttgtgtatgcataatcctccgatatacatttcgatgatgctaaaggactaaattcat---ctgagcttatg---cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAGGCTGAGGTAACCAAGTCCCAGAAGTCGCAGTCGAAGGGTGCCGCCCCG---
               | |  |  |   | ||   |||| ||| |     |||   ||  |  ||   |||| |||  ||    || | | |||   ||     |||||||||||||||| | ||||| |||||||| |||||||||||||| |||||||  ||  |  |    ||  || |   | ||   |||| |     |||    
-------------gttagttttctccctctgtcaaatcatccaactaggattaaaatagttatatttgacttaataaatgtattgtgatgatgattcaacaaacagTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAGGTGGAATTTGCT---TCTAAGCAACAGAAGGTCAAGGCTAATTTCCCCAAA

upper sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 5
lower sequence: AT2G36620.1 (Arabidopsis thaliana), 3'ss of exon 4
--atgcataatcccctattgcatcttgtgtatgcataatcctccgatatacatttcgatgatgctaaaggactaaattcatctgagcttatgcattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAGGCTGAG---GTAACCAAGTCCCAGAAGTCGCAGTCGAAGGGTGCCGCCCCG
   ||  |  | ||| |   ||     | ||| ||| |   |    |  | | |   |||    | |  || | ||   | || | || ||| ||| |||||||||||||||||  | ||||||||||||||||| || |||||||| |||||||  |||   | | | |||   |||||||| ||   ||||||      |   
gtttgtttctttcccgaagacagtcactatatacatcaatttttttttgaaactgaaatg----tgattgattcaa---agctaatctgatg-attatgcagTGAGATCAAGGAGAGAATCAAGAAGACCAAGGACGAGAAGAAGGCAAAGAAGGTCGAGTATGCATCAAAGCAACAGAAGTCACAAGTGAAGGGAAATATC---

upper sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv16s0100g00650.t01 (Vitis vinifera), 3'ss of exon 3
atgcataatcccctattgcatcttgtgtatgca-taatcctccgatatacatttcgatgatgctaaa----ggactaaattca----tctgagct-------tatgcattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAGGCTGAGGTAA---CCAAGTCCCAGAAGTCGCAGTCGAAGGGTGCCGCCCCG
 ||  || ||     ||| |  || |  ||    |    |||| | |||| | | | |    || |     || | |||||      |||||  |       | || |   |||||||| || || ||  | |||||||| ||||||||||||||||| || ||||||||||||||||   ||||| | |||||  | |||   |||||||  |||   
gtgggta-tcattccttgaactttctaaatttgctgggtctcccaaatacctattgttagcacttagcagtgggcgaaattttccattctgaattgcattattctgtaacctgcagTGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAAGGCTGAGGTAATGGCCAAGACGCAGAAAACTCAGAGCAAGGGTGT-GCCT--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88967887|gb|CI098129.1|CI098129
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88850397|gb|CI093078.1|CI093078
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88470642|gb|CI407913.1|CI407913
EST:     AGAGAAGCTGCTCTTCG                         TGAGATCAAGGGACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88482669|gb|CI419940.1|CI419940
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86531960|gb|CI172166.1|CI172166
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86528671|gb|CI168877.1|CI168877
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88208174|gb|CI208023.1|CI208023
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88207631|gb|CI207480.1|CI207480
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88524677|gb|CI453519.1|CI453519
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88560226|gb|CI490868.1|CI490868
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88209865|gb|CI209714.1|CI209714
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86846599|gb|CI280891.1|CI280891
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88474240|gb|CI411511.1|CI411511
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88548515|gb|CI476891.1|CI476891
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86252330|gb|CI056067.1|CI056067
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88488947|gb|CI426218.1|CI426218
EST:     TCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: TCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88979982|gb|CI026272.1|CI026272
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86510494|gb|CI153127.1|CI153127
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAAAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|396941383|gb|HO188592.1|HO188592
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88903650|gb|CI089188.1|CI089188
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86522740|gb|CI162946.1|CI162946
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|33810488|gb|CF331132.1|CF331132
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|40488270|gb|BX898823.1|BX898823
EST:     GAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: GAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86855682|gb|CI269009.1|CI269009
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86854291|gb|CI254236.1|CI254236
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88543994|gb|CI474052.1|CI474052
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|3760627|gb|C97881.1|C97881
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88957747|gb|CI095521.1|CI095521
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86433171|gb|CI093514.1|CI093514
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88375187|gb|CI523452.1|CI523452
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88518835|gb|CI445681.1|CI445681
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88461274|gb|CI547454.1|CI547454
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88982773|gb|CI028186.1|CI028186
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88239713|gb|CI238875.1|CI238875
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88215256|gb|CI215105.1|CI215105
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88535319|gb|CI464114.1|CI464114
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88381130|gb|CI525900.1|CI525900
EST:     GATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: GATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88534236|gb|CI462942.1|CI462942
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|87019616|gb|CI282117.1|CI282117
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGGTGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88527212|gb|CI455344.1|CI455344
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86596020|gb|CI266523.1|CI266523
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88240039|gb|CI239201.1|CI239201
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88522146|gb|CI449883.1|CI449883
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88522508|gb|CI450274.1|CI450274
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|87016024|gb|CI281767.1|CI281767
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88305004|gb|CI540243.1|CI540243
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88420450|gb|CI562084.1|CI562084
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88478361|gb|CI415632.1|CI415632
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88215635|gb|CI215484.1|CI215484
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86432487|gb|CI086098.1|CI086098
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86530470|gb|CI170676.1|CI170676
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88489391|gb|CI426663.1|CI426663
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88508705|gb|CI436211.1|CI436211
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88461066|gb|CI550229.1|CI550229
EST:     GCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: GCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|89167279|gb|CI252810.1|CI252810
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88537034|gb|CI464845.1|CI464845
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88507193|gb|CI434699.1|CI434699
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88480841|gb|CI418112.1|CI418112
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88240722|gb|CI239884.1|CI239884
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88213797|gb|CI213646.1|CI213646
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|55409737|gb|CV722113.1|CV722113
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|8324524|gb|AU091671.1|AU091671
EST:     GAGCTGAAAAGCCTGGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: GAGCTGAAAAGCCT-GAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88556444|gb|CI486772.1|CI486772
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88212384|gb|CI212024.1|CI212024
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|87013690|gb|CI269189.1|CI269189
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88462910|gb|CI519822.1|CI519822
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88974434|gb|CI021975.1|CI021975
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88487448|gb|CI424719.1|CI424719
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTGTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGNATGAAAAGAAGNCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|5607423|gb|AU076121.1|AU076121
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|33810490|gb|CF331133.1|CF331133
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86821199|gb|CI266749.1|CI266749
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|3762630|gb|AU029382.1|AU029382
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTNCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAANGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86508253|gb|CI150886.1|CI150886
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88397656|gb|CI684589.1|CI684589
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGA
EST: gi|88551767|gb|CI481850.1|CI481850
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|3763216|gb|AU029968.1|AU029968
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88553133|gb|CI483209.1|CI483209
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88551158|gb|CI481190.1|CI481190
EST:     AAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88525437|gb|CI453443.1|CI453443
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88515722|gb|CI443376.1|CI443376
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88538955|gb|CI468023.1|CI468023
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88239728|gb|CI238890.1|CI238890
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88529914|gb|CI458272.1|CI458272
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88208925|gb|CI206776.1|CI206776
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88244484|gb|CI243606.1|CI243606
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88553288|gb|CI483388.1|CI483388
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88215615|gb|CI215464.1|CI215464
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88203551|gb|CI203400.1|CI203400
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86533019|gb|CI173225.1|CI173225
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88534931|gb|CI463693.1|CI463693
EST:     CTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: CTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88501966|gb|CI429472.1|CI429472
EST:     CTGAAGTTCNTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATNAAAAGAAGGCGAAGAA
genomic: CTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86500360|gb|CI142993.1|CI142993
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|88528792|gb|CI457058.1|CI457058
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
EST: gi|86424361|gb|CI063122.1|CI063122
EST:     AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA
genomic: AGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 38 (upstream exon), 48 (downstream exon)
Score: 59

CATACTCTAGGTCAATTGTTGGTGCTTCGTTGGAAGTCATCCAAAAGAAGAGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTTCGgtatgctctt ... cattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAGGCTGAGGTAACCAAGTCCCAGAAGTCGCAGTCGAAGGGTGCCGCCCCG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacatttcgatgatgctaaaggactaaattcatctgagcttatgcattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAGGCTGAGGTAACCAAGTCCCAGAAGTCGCAGTCGAAGGGTGCCGCCCCG
                      gactaaa  putative branch site (score: 59)
                         taaattcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgcataatcccctattgcatcttgtgtatgcataatcctccgatatacatttcgatgatgctaaaggactaaattcatctgagcttatgcattgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAGGCTGAGGTAACCAAGTCCCAGAAGTCGCAGTCGAAGGGTGCCGCCCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
atgcata
- - - - - - - - tgcatct
- - - - - - - - - - - - -tgtatgc
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