1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagttttagccatgatcttactaaaggaagctgttcggtttaaccaaacataacgagttattgctctctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCATCCCG
species | Oryza sativa |
transcript | LOC_Os05g38610.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAGGTGTCAGCACATGGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCEST: gi|88983146|gb|CI020710.1|CI020710
genomic: AAAGGTGTCAGCACATGG-AATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCC
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|88528858|gb|CI457130.1|CI457130
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: CACTCGGTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATTTCTTEST: gi|88531910|gb|CI458431.1|CI458431
genomic: CACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|33692847|gb|CF321086.1|CF321086
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|396941400|gb|HO188609.1|HO188609
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|88531919|gb|CI458441.1|CI458441
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|33692848|gb|CF321087.1|CF321087
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|88839775|gb|CI015866.1|CI015866
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|8857691|gb|AU095009.1|AU095009
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|88480576|gb|CI417847.1|CI417847
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|86868980|gb|CI334352.1|CI334352
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: TGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG AATATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|88541797|gb|CI471090.1|CI471090
genomic: TGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGACCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|29682909|gb|CB679184.1|CB679184
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|88526854|gb|CI454945.1|CI454945
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: GGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|33820857|gb|CF336233.1|CF336233
genomic: GGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|163918457|gb|EG713211.1|EG713211
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|88535403|gb|CI464201.1|CI464201
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AGGTGGTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|88524799|gb|CI453746.1|CI453746
genomic: AGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAGGGTGTCAGCACATGGAATAGAAGGTGGTACTTCACTCNCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|218500698|gb|FG952590.1|FG952590
genomic: AAA-GGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|88531839|gb|CI460354.1|CI460354
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|88533791|gb|CI460457.1|CI460457
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|88383090|gb|CI538118.1|CI538118
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTEST: gi|88545337|gb|CI474890.1|CI474890
genomic: AAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
EST: GGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG ACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATTTCTT
genomic: GGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGgtaagtttta ... ctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTT
aaaggaagctgttcggtttaaccaaacataacgagttattgctctctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCATCCCG
ttgctctct CT-rich tract
aaacataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttagccatgatcttactaaaggaagctgttcggtttaaccaaacataacgagttattgctctctgaatgcagACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCATCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA