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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcactgcttctcttgatcagtaacagtctcctacagtttcttactgactgcaacagaaaaaaagtgttcttgcttaattagctgctcactgtctgctcctcttgtttctttgattaattgctttatagcagAACTCGCAGTCAGTAGGGAGCACCACTGACTCTAGCTCAGCTCAGAACACAATGTCACAGGCCGAGTTGGTGTCCCCAGCGAGCATGAGGTCCGACTCTG

Basic information

species Oryza sativa
transcript LOC_Os05g37170.4
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g37170.3 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G000842_T02 (Zea mays), 3'ss of exon 4
gtaagcactgcttct-cttgatcagtaacagtctcctacagtttctt-actgactgcaacagaaaaaaagtgttcttgcttaattagctgctcactgtctgctcctct-tgtttct-ttgattaattgctttatagcagAACTCGCAGTCAGTAGGGAGCACCACTGACTCTAGCTCAGCTCAGAACACAATGTCACAGGCCGAGTTGGTGTCCCCAGCGAGCATGAGGTCCGACTCTG
|||||||||| ||||  || |||| |  ||||  ||||||||| |||  |||||   ||| | | ||| ||||||||| ||||||| |||||||||| || || || | || | || |||||  ||||||    ||   |||||||| |||||||||||||||||||| || ||||||| ||||||||  ||| ||||| ||||| |||||||||||| |||||||||| ||||||   
gtaagcactgtttctgtttcatcattcgcagtgccctacagttcctttgctgacca-aaccggacaaaggtgttcttggttaattaactgctcactgccttcttctgtctgctcctcttgatggattgctgcgcagGGTAACTCGCACTCAGTAGGGAGCACCACTGAGTCGAGCTCAGGTCAGAACAGTATGCCACAGACCGAGCTGGTGTCCCCAGGGAGCATGAGGGCCGACT---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagctgctcactgtctgctcctcttgtttctttgattaattgctttatagcagAACTCGCAGTCAGTAGGGAGCACCACTGACTCTAGCTCAGCTCAGAACACAATGTCACAGGCCGAGTTGGTGTCCCCAGCGAGCATGAGGTCCGACTCTG
                                         ttgcttt  CT-rich tract
                            tttctttgattaatt  TA-rich tract