1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttggctcttcatctggttgaatactgaaacaagcttatgttgtgtgtacaatgtgcttcttggccttaatttctgtgggtgcatttcagGTTAACCTAGTAGAGTGGCTCAAGAATATGGTGAGCAACCGGGACTATGAAGCTGTTCTGGACCCAAAATTGCCAGAGAAGCCTACCTCCAAGGCACTGA
species | Oryza sativa |
transcript | LOC_Os05g36050.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATCATCTCCGGTCGAAGCCCGGTCGATTACGCAAGGGCTCCAGGAGAG GTTAACCTAGTAGAGTGGCTCAAGAATATGGTGAGCAACCGGGACTATGAAEST: gi|58599417|gb|CK009945.1|CK009945
genomic: AAATCATCTCCGGTCGAAGCCCGGTCGATTACGCAAGGGCTCCAGGAGAGgttggctctt ... tgcatttcagGTTAACCTAGTAGAGTGGCTCAAGAATATGGTGAGCAACCGGGACTATGAA
EST: AAATCATCTCCGGTCGAAGCCCGGTCGATTACGCAAGGGCTCCAGGAGAG GTTAACCTAGTAGAGTGGCEST: gi|58685024|gb|CK073711.1|CK073711
genomic: AAATCATCTCCGGTCGAAGCCCGGTCGATTACGCAAGGGCTCCAGGAGAGgttggctctt ... tgcatttcagGTTAACCTAGTAGAGTGGC
EST: AAATCATCTCCGGTCGAAGCCCGGTCGATTACGCAAGGGCTCCAGGAGAG GTTAACCTAGTAGAGTGGCTCAAGAATATGGTGAGCAACCGGGACTATGAAEST: gi|25806771|gb|CA762732.1|CA762732
genomic: AAATCATCTCCGGTCGAAGCCCGGTCGATTACGCAAGGGCTCCAGGAGAGgttggctctt ... tgcatttcagGTTAACCTAGTAGAGTGGCTCAAGAATATGGTGAGCAACCGGGACTATGAA
EST: AAATCATCTCCGGTCGAAGCCCGGTCGATTACGCAAGGGCTCCAGGAGAG GTTAACCTAGTAGAGTGGCTCAAGAATATGGTGAGCAACCGGGACTATGAA
genomic: AAATCATCTCCGGTCGAAGCCCGGTCGATTACGCAAGGGCTCCAGGAGAGgttggctctt ... tgcatttcagGTTAACCTAGTAGAGTGGCTCAAGAATATGGTGAGCAACCGGGACTATGAA
ttatgttgtgtgtacaatgtgcttcttggccttaatttctgtgggtgcatttcagGTTAACCTAGTAGAGTGGCTCAAGAATATGGTGAGCAACCGGGACTATGAAGCTGTTCTGGACCCAAAATTGCCAGAGAAGCCTACCTCCAAGGCACTGA
ccttaat putative branch site (score: 5)
ttaatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggctcttcatctggttgaatactgaaacaagcttatgttgtgtgtacaatgtgcttcttggccttaatttctgtgggtgcatttcagGTTAACCTAGTAGAGTGGCTCAAGAATATGGTGAGCAACCGGGACTATGAAGCTGTTCTGGACCCAAAATTGCCAGAGAAGCCTACCTCCAAGGCACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC