1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcattgaagtatcaaccatgctgtttgatgtcgttttaatgcttaatcttcagagcatgttgctttctatcactgccttttctaaatgagaatgctacagACTGCCGGGGCTATTGGAGGAATTGCGGCTTCTCTCATTCGCGTCCCCACAGAG
species | Oryza sativa |
transcript | LOC_Os05g29860.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTT ACTGCCGGGGCTATTGGAGGAATTGCGGCTTCTCTCATTCGCGTCCCCACAEST: gi|88667078|gb|CI719214.1|CI719214
genomic: GAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTTgtaagttaac ... aatgctacagACTGCCGGGGCTATTGGAGGAATTGCGGCTTCTCTCATTCGCGTCCCCACA
EST: GAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTT ACTGCCGGGGCEST: gi|33682562|gb|CF310801.1|CF310801
genomic: GAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTTgtaagttaac ... aatgctacagACTGCCGGGGC
EST: GAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTT ACTGCCGGGGCTATTGGAGGAATTGCGGCTTCTCTCATTCGCGTCCCCACAEST: gi|33686568|gb|CF314807.1|CF314807
genomic: GAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTTgtaagttaac ... aatgctacagACTGCCGGGGCTATTGGAGGAATTGCGGCTTCTCTCATTCGCGTCCCCACA
EST: GAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTT ACTGCCGGGGCTATTGGAGGAATTGCGGCTTCTCTCATTCGCGTCCCCACAEST: gi|88431710|gb|CI576901.1|CI576901
genomic: GAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTTgtaagttaac ... aatgctacagACTGCCGGGGCTATTGGAGGAATTGCGGCTTCTCTCATTCGCGTCCCCACA
EST: GAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTT ACTGCCGGGGCTATTGGAGGAATEST: gi|11565230|gb|AU165866.1|AU165866
genomic: GAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTTgtaagttaac ... aatgctacagACTGCCGGGGCTATTGGAGGAAT
EST: GAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTT ACTGCCGGGGGCTATTGGAAGAATTGCGGCTTCTCTCATEST: gi|2427972|gb|C72435.1|C72435
genomic: GAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTTgtaagttaac ... aatgctacagACTGCCGGGG-CTATTGGAGGAATTGCGGCTTCTCTCAT
EST: GAAAACTACTTGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTT ACTNCCGGGGGCTATTTGAGGAATTGCGGCTTCTCTEST: gi|33681239|gb|CF309478.1|CF309478
genomic: GAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTTgtaagttaac ... aatgctacagACTGCCGGGG-CTATTGGAGGAATTGCGGCTTCTCT
EST: GAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTT ACTGCCGGGGCTATTGGAGGAATTGCGGCTTCTCTCATTCGCG
genomic: GAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTTgtaagttaac ... aatgctacagACTGCCGGGGCTATTGGAGGAATTGCGGCTTCTCTCATTCGCG
atcttcagagcatgttgctttctatcactgccttttctaaatgagaatgctacagACTGCCGGGGCTATTGGAGGAATTGCGGCTTCTCTCATTCGCGTCCCCACAGAG
ttctaaa putative branch site (score: 11)
ttttctaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcattgaagtatcaaccatgctgtttgatgtcgttttaatgcttaatcttcagagcatgttgctttctatcactgccttttctaaatgagaatgctacagACTGCCGGGGCTATTGGAGGAATTGCGGCTTCTCTCATTCGCGTCCCCACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - -tgcttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttg