1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agctaacctgtatgtcttctctgcaatgaattaattcagttgcatgcctttggtttgtattagaatgctgatcttgccagtaacaatttttcttttgcagAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCAAAATTGTGGAAGGAGTTCTCAGCCATCAGCTGAAACAGTTTGTCATTG
species | Oryza sativa |
transcript | LOC_Os05g28280.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAG AACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCEST: gi|58597052|gb|CK007580.1|CK007580
genomic: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGgtgcattgaa ... tcttttgcagAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGC
EST: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAG AACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCEST: gi|58694139|gb|CK082826.1|CK082826
genomic: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGgtgcattgaa ... tcttttgcagAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGC
EST: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAG AACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCEST: gi|58587681|gb|CF985989.1|CF985989
genomic: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGgtgcattgaa ... tcttttgcagAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGC
EST: AGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAG AACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCEST: gi|6850180|gb|AU082299.1|AU082299
genomic: AGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGgtgcattgaa ... tcttttgcagAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGC
EST: CAACACAGCGGCCAGAAGTTGCTTTGAGGCTTGTTAGACCT-GGAAGAAG ACCAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCEST: gi|58684011|gb|CK072698.1|CK072698
genomic: CAACACAGCGG-CAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGgtgcattgaa ... tcttttgcagAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGC
EST: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAG AACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCEST: gi|58678661|gb|CK067348.1|CK067348
genomic: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGgtgcattgaa ... tcttttgcagAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGC
EST: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAG AACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCEST: gi|58605226|gb|CK033259.1|CK033259
genomic: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGgtgcattgaa ... tcttttgcagAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGC
EST: GCAACACAGCGGCAGAAGTTGGTCTGAGGCTTGTTAGACCTGGGAAGAAG AACAAGGATGTCACCGAAGCGATTCAGAAAGTTEST: gi|33793355|gb|CF322559.1|CF322559
genomic: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGgtgcattgaa ... tcttttgcagAACAAGGATGTCACCGAAGCGATTCAGAAAGTT
EST: GGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAG AACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCEST: gi|88721086|gb|CI744385.1|CI744385
genomic: GGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGgtgcattgaa ... tcttttgcagAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGC
EST: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAG AACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCEST: gi|58686553|gb|CK075240.1|CK075240
genomic: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGgtgcattgaa ... tcttttgcagAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGC
EST: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAG AACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCEST: gi|13806640|gb|AU181604.1|AU181604
genomic: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGgtgcattgaa ... tcttttgcagAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGC
EST: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAG AACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGC
genomic: CCAACACAGCGGCAGAAGTTGCTCTGAGGCTTGTTAGACCTGGGAAGAAGgtgcattgaa ... tcttttgcagAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGC
gcctttggtttgtattagaatgctgatcttgccagtaacaatttttcttttgcagAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCAAAATTGTGGAAGGAGTTCTCAGCCATCAGCTGAAACAGTTTGTCATTG
cagtaac putative branch site (score: 60)
tttttcttttgc putative PPT
taacaatttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctaacctgtatgtcttctctgcaatgaattaattcagttgcatgcctttggtttgtattagaatgctgatcttgccagtaacaatttttcttttgcagAACAAGGATGTCACCGAAGCGATTCAGAAAGTTGCTGCTGCTTATGACTGCAAAATTGTGGAAGGAGTTCTCAGCCATCAGCTGAAACAGTTTGTCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - -ctgtatg
- - - - - - - - - ctctgca
- - - - - - - - - - - - - - - - - - cagttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaacaa