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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcaattagtacctcaatgtttgacctgtaattagttctaatgaatacactaaccattcttcatttcctcaataattttccaccaaaccatgggaaatgttgattttcatgcgcagATCAG

Basic information

species Oryza sativa
transcript LOC_Os05g24550.4
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29688861|gb|CB685136.1|CB685136
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|58688070|gb|CK076757.1|CK076757
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|27578059|gb|CB000754.1|CB000754
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|29680417|gb|CB676692.1|CB676692
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|29686789|gb|CB683064.1|CB683064
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|33798896|gb|CF325305.1|CF325305
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|58693640|gb|CK082327.1|CK082327
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|33806214|gb|CF328987.1|CF328987
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|29666315|gb|CB662590.1|CB662590
EST:     CATGGTCACAGTGTAACACAATGGGGACCATACTTG                         ATCAG
genomic: CATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|29640250|gb|CB645259.1|CB645259
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|58609130|gb|CK037163.1|CK037163
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|66923450|gb|CX110298.1|CX110298
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|29656220|gb|CB652495.1|CB652495
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttcctcaataattttccaccaaaccatgggaaatgttgattttcatgcgcagATCAG
                                    tgttgat  putative branch site (score: 4)
                                          ttttcat  CT-rich tract
       tcaataatttt  TA-rich tract