1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcatgtcttgttttctgactgtcttattttgtttcagtacatttacacttgagcacagttatgtatatcttcattaatacatttgtggtcggtggtgcagGTAGCTTTGTTGCTACAAGTTGGAAGGGAGGCACTACCACCTGACATCGTCGCAAAAATCATCGCAGCAAGAGACCGCAAGGAACTAGCAAAGGTGGCAT
species | Oryza sativa |
transcript | LOC_Os05g19954.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTTCTGTACAGACAAGTTAGGAACATG GTAGCTTTGTTGCTACAAGTTGGAAGGGAGGCACTACCACCTGACATCGTCEST: gi|88293110|gb|CI512875.1|CI512875
genomic: CTTTCTGTACAGACAAGTTAGGAACATGgtaattttgt ... ggtggtgcagGTAGCTTTGTTGCTACAAGTTGGAAGGGAGGCACTACCACCTGACATCGTC
EST: CTTGAGATTGAAGGCACTGGCTTTCTGTACAGACAAGTTAGGAACATG GTAGCTTTGTTGCTACAAGTTGGAAGGGAGGCACTACCACCTGACATCGTCEST: gi|88997198|gb|CI389864.1|CI389864
genomic: CTTGAGATTGAAGGCACTGGCTTTCTGTACAGACAAGTTAGGAACATGgtaattttgt ... ggtggtgcagGTAGCTTTGTTGCTACAAGTTGGAAGGGAGGCACTACCACCTGACATCGTC
EST: AGCTTGAGATTGAAGGCACTGGCTTTCTGTACAGACAAGTTAGGAACATG GTAGCTTTGTTGCTACAAGTTGGAAGGGAGGCACTACCACCTGACATCGTCEST: gi|88374762|gb|CI518629.1|CI518629
genomic: AGCTTGAGATTGAAGGCACTGGCTTTCTGTACAGACAAGTTAGGAACATGgtaattttgt ... ggtggtgcagGTAGCTTTGTTGCTACAAGTTGGAAGGGAGGCACTACCACCTGACATCGTC
EST: AGCTTGAGATTGAAGGCACTGGCTTTCTGTACAGACAAGTTAGGAACATG GTAGCTTTGTTGCTACAAGTTGGAAGGGAGGCACTACCACCTGACATCGTCEST: gi|87019504|gb|CI282005.1|CI282005
genomic: AGCTTGAGATTGAAGGCACTGGCTTTCTGTACAGACAAGTTAGGAACATGgtaattttgt ... ggtggtgcagGTAGCTTTGTTGCTACAAGTTGGAAGGGAGGCACTACCACCTGACATCGTC
EST: AGCTTGAGATTGAAGGCACTGGCTTTCTGTACAGACAAGTTAGGAACATG GTAGCTTTGTTGCTACAAGTTGGAAGGGAGGCACTACCACCTGACATCGTCEST: gi|88435895|gb|CI514034.1|CI514034
genomic: AGCTTGAGATTGAAGGCACTGGCTTTCTGTACAGACAAGTTAGGAACATGgtaattttgt ... ggtggtgcagGTAGCTTTGTTGCTACAAGTTGGAAGGGAGGCACTACCACCTGACATCGTC
EST: CTGTACAGACAAGTTAGGAACATG GTAGCTTTGTTGCTACAAGTTGGAAGGGAGGCACTACCACCTGACATCGTC
genomic: CTGTACAGACAAGTTAGGAACATGgtaattttgt ... ggtggtgcagGTAGCTTTGTTGCTACAAGTTGGAAGGGAGGCACTACCACCTGACATCGTC
cacttgagcacagttatgtatatcttcattaatacatttgtggtcggtggtgcagGTAGCTTTGTTGCTACAAGTTGGAAGGGAGGCACTACCACCTGACATCGTCGCAAAAATCATCGCAGCAAGAGACCGCAAGGAACTAGCAAAGGTGGCAT
cattaat putative branch site (score: 3)
ttatgtatatcttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgtcttgttttctgactgtcttattttgtttcagtacatttacacttgagcacagttatgtatatcttcattaatacatttgtggtcggtggtgcagGTAGCTTTGTTGCTACAAGTTGGAAGGGAGGCACTACCACCTGACATCGTCGCAAAAATCATCGCAGCAAGAGACCGCAAGGAACTAGCAAAGGTGGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG