1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaagataccccattgatttctaacttcttatttctacttgtaaaagaactaaatttggaatggtcatatctattgtcaaacatgataatatttcaaactttcaataacagGTACTTTGATAGTTCTGGATTCAGTGGTCCGTTCCCTTCATCGTTCTCAAAACTTCAGAACCTGAAGTTCTT
species | Oryza sativa |
transcript | LOC_Os05g17604.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACAGGAAGTCTTCCAGAAGAACTGGGTAACTTGACCAAACTTCAGCAATT GTACTTTGATAGTTCTGGATTCAGTGGTCCGTTCCCTTCATCGTTCTCAAAEST: gi|29627199|gb|CB632210.1|CB632210
genomic: ACAGGAAGTCTTCCAGAAGAACTGGGTAACTTGACCAAACTTCAGCAATTgtaagatacc ... tcaataacagGTACTTTGATAGTTCTGGATTCAGTGGTCCGTTCCCTTCATCGTTCTCAAA
EST: ACAGGAAGTCTTCCAGAAGAACTGGGTAACTTGACCAAACTTCAGCAATT GTACTTTGATAGTTCTGGATTCAGTGGTCCGTTCCCTTCATCGTTCTCAAAEST: gi|29680539|gb|CB676814.1|CB676814
genomic: ACAGGAAGTCTTCCAGAAGAACTGGGTAACTTGACCAAACTTCAGCAATTgtaagatacc ... tcaataacagGTACTTTGATAGTTCTGGATTCAGTGGTCCGTTCCCTTCATCGTTCTCAAA
EST: ACAGGAAGTCTTCCAGAAGAACTGGGTAACTTGACCAAACTTCAGCAATT GTACTTTGATAGTTCTGGATTCAGTGGTCCGTTCCCTTCATCGTTCTCAAAEST: gi|29622647|gb|CB627658.1|CB627658
genomic: ACAGGAAGTCTTCCAGAAGAACTGGGTAACTTGACCAAACTTCAGCAATTgtaagatacc ... tcaataacagGTACTTTGATAGTTCTGGATTCAGTGGTCCGTTCCCTTCATCGTTCTCAAA
EST: ACAGGAAGTCTTCCAGAAGAACTGGGTAACTTGACCAAACTTCAGCAATT GTACTTTGATAGTTCTGGATTCAGTGGTCCGTTCCCTTCATCGTTCTCAAAEST: gi|29624375|gb|CB629386.1|CB629386
genomic: ACAGGAAGTCTTCCAGAAGAACTGGGTAACTTGACCAAACTTCAGCAATTgtaagatacc ... tcaataacagGTACTTTGATAGTTCTGGATTCAGTGGTCCGTTCCCTTCATCGTTCTCAAA
EST: ACAGGAAGTCTTCCAGAAGAACTGGGTAACTTGACCAAACTTCAGCAATT GTACTTTGATAGTTCTGGATTCAGTGGTCCGTTCCCTTCATCGTTCTCAAA
genomic: ACAGGAAGTCTTCCAGAAGAACTGGGTAACTTGACCAAACTTCAGCAATTgtaagatacc ... tcaataacagGTACTTTGATAGTTCTGGATTCAGTGGTCCGTTCCCTTCATCGTTCTCAAA
tggaatggtcatatctattgtcaaacatgataatatttcaaactttcaataacagGTACTTTGATAGTTCTGGATTCAGTGGTCCGTTCCCTTCATCGTTCTCAAAACTTCAGAACCTGAAGTTCTT
ctttc CT-rich tract
ataatatttcaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagataccccattgatttctaacttcttatttctacttgtaaaagaactaaatttggaatggtcatatctattgtcaaacatgataatatttcaaactttcaataacagGTACTTTGATAGTTCTGGATTCAGTGGTCCGTTCCCTTCATCGTTCTCAAAACTTCAGAACCTGAAGTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG