1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atttccactggcactggtcttgttatttcattcctttctctgtctctttgttacttgtgattacatatttgtttttacagcttaacatcttttgctacagCTGAAAGAGAAGCTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCTTAGAGATAAA
species | Oryza sativa |
transcript | LOC_Os05g13440.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTGAACCGGCTGAATAAGACAAAAGTGGAGCGCAAGCCTGACTTAAAGG CTGAAAGAGAAGCTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCEST: gi|58663146|gb|CK051832.1|CK051832
genomic: TGTGAACCGGCTGAATAAGACAAAAGTGGAGCGCAAGCCTGACTTAAAGGgtacaacact ... tttgctacagCTGAAAGAGAAGCTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGC
EST: TGTGAACCGGCTGAATAAGACAAAAGTGGAGCGCAAGCCTGACTTAAAGG CTGAAAGAGAAGCTGTGAGTGCAGCAGEST: gi|33808583|gb|CF330177.1|CF330177
genomic: TGTGAACCGGCTGAATAAGACAAAAGTGGAGCGCAAGCCTGACTTAAAGGgtacaacact ... tttgctacagCTGAAAGAGAAGCTGTGAGTGCAGCAG
EST: TGTGAACCGGCTGAATAAGACAAAAGTGGAGCGCAAGCCTGACTTAAAGG CTGAAAGAGAAGCTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCEST: gi|8858770|gb|AU096088.1|AU096088
genomic: TGTGAACCGGCTGAATAAGACAAAAGTGGAGCGCAAGCCTGACTTAAAGGgtacaacact ... tttgctacagCTGAAAGAGAAGCTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGC
EST: TGTGAACCGGCTGAATAAGACAAAAGTGGAGCGCAAGCCTGACTTAAAGG CTGAAAGAGAAGCTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCEST: gi|396941371|gb|HO188580.1|HO188580
genomic: TGTGAACCGGCTGAATAAGACAAAAGTGGAGCGCAAGCCTGACTTAAAGGgtacaacact ... tttgctacagCTGAAAGAGAAGCTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGC
EST: TGTGAACCGGCTGAATAAGACAAAAGTGGAGCGCAAGCCTGACTTAAAGG CTGAAAGAGAAGCTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGC
genomic: TGTGAACCGGCTGAATAAGACAAAAGTGGAGCGCAAGCCTGACTTAAAGGgtacaacact ... tttgctacagCTGAAAGAGAAGCTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGC
ctttgttacttgtgattacatatttgtttttacagcttaacatcttttgctacagCTGAAAGAGAAGCTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCTTAGAGATAAA
gcttaac putative branch site (score: 13)
tcttttgct CT-rich tract
attacatatttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttccactggcactggtcttgttatttcattcctttctctgtctctttgttacttgtgattacatatttgtttttacagcttaacatcttttgctacagCTGAAAGAGAAGCTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCTTAGAGATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - gcactgg
- - - - - - - - - - - - -tttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacagct