1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgttgtactacatccttgtctctctctctttctgtttaccttattttcagcattgctacatggctaaacaacttggttatctcctgttccttctgctgatgcagTTACTGAGGCAAGTTGGTCCCCGTGATTATGCAGTGAGCTCAAGGAAGTAAGAAGAACAGTATGAGTTCCAAGGAAAATAAAGAACATATACATAGCAGC
species | Oryza sativa |
transcript | LOC_Os05g09410.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAAGAGGGAGCATGCCACTCTGAAGCAGAAGCTGGAATCATATTTTCAG TTACTGAGGCAAGTTGGTCCCCGTGATTATGCAGTGAGCTCAAGGAAGTAA
genomic: TGAAGAGGGAGCATGCCACTCTGAAGCAGAAGCTGGAATCATATTTTCAGgtatgttgta ... gctgatgcagTTACTGAGGCAAGTTGGTCCCCGTGATTATGCAGTGAGCTCAAGGAAGTAA
gcattgctacatggctaaacaacttggttatctcctgttccttctgctgatgcagTTACTGAGGCAAGTTGGTCCCCGTGATTATGCAGTGAGCTCAAGGAAGTAAGAAGAACAGTATGAGTTCCAAGGAAAATAAAGAACATATACATAGCAGC
tgctgat putative branch site (score: 1)
ttatctcctgttcctt CT-rich tract
taaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgtactacatccttgtctctctctctttctgtttaccttattttcagcattgctacatggctaaacaacttggttatctcctgttccttctgctgatgcagTTACTGAGGCAAGTTGGTCCCCGTGATTATGCAGTGAGCTCAAGGAAGTAAGAAGAACAGTATGAGTTCCAAGGAAAATAAAGAACATATACATAGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC