1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cacagaattcggttgtatgtcactgttgagatgtttggtagtttgttgtacaatttctgagatcctcaattgtgaaacaattttcttgattgtcatgcagGCTGCTAAAAGGCATTTGACTCAGCGTATTGAAAGGTTGGATGATAAATTGGATCAGCAAAAGGCGCTTTCTGGACAAATAAGAGATGAT
species | Oryza sativa |
transcript | LOC_Os05g08980.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGTTTCCAGTATGACTAAGCATCTGGAGCAAGTGCAAACCTCTCTTGCT GCTGCTAAAAGGCATTTGACTCAGCGTATTGAAAGGTTGGATGATAAATTGEST: gi|29663313|gb|CB659588.1|CB659588
genomic: CTGTTTCCAGTATGACTAAGCATCTGGAGCAAGTGCAAACCTCTCTTGCTgtaagtctta ... tgtcatgcagGCTGCTAAAAGGCATTTGACTCAGCGTATTGAAAGGTTGGATGATAAATTG
EST: CTGTTTCCAGTATGACTAAGCATCTGGAGCAAGTGCAAACCTCTCTTGCT GCTGCTAAAAGGCATTTGACTCAGCGTATTGAAAGGTTGGATGATAAATTGEST: gi|29674385|gb|CB670660.1|CB670660
genomic: CTGTTTCCAGTATGACTAAGCATCTGGAGCAAGTGCAAACCTCTCTTGCTgtaagtctta ... tgtcatgcagGCTGCTAAAAGGCATTTGACTCAGCGTATTGAAAGGTTGGATGATAAATTG
EST: TCCAGTATGACTAAGCATCTGGAGCAAGTGCAAACCTCTCTTGCT GCTGTTAAAAGGCATTTGACTCAGCGTATTGAAAGGTTGGATGATAAATTGEST: gi|29671281|gb|CB667556.1|CB667556
genomic: TCCAGTATGACTAAGCATCTGGAGCAAGTGCAAACCTCTCTTGCTgtaagtctta ... tgtcatgcagGCTGCTAAAAGGCATTTGACTCAGCGTATTGAAAGGTTGGATGATAAATTG
EST: CTGTTTCCAGTATGACTAAGCATCTGGAGCAAGTGCAAACCTCTCTTGCT GCTGCTAAAAGGCATTTGACTCAGCGTATTGAAAGGTTGGATGATAAATTGEST: gi|29688958|gb|CB685233.1|CB685233
genomic: CTGTTTCCAGTATGACTAAGCATCTGGAGCAAGTGCAAACCTCTCTTGCTgtaagtctta ... tgtcatgcagGCTGCTAAAAGGCATTTGACTCAGCGTATTGAAAGGTTGGATGATAAATTG
EST: TTCCAGTATGACTAAGCATCTGGAGCAAGTGCAAACCTCTCTTGTT GCTGCTAAAAGGCATTTGACTCAGCGTATTGAAAGGTTGGATGATAAATTG
genomic: TTCCAGTATGACTAAGCATCTGGAGCAAGTGCAAACCTCTCTTGCTgtaagtctta ... tgtcatgcagGCTGCTAAAAGGCATTTGACTCAGCGTATTGAAAGGTTGGATGATAAATTG
ttgtacaatttctgagatcctcaattgtgaaacaattttcttgattgtcatgcagGCTGCTAAAAGGCATTTGACTCAGCGTATTGAAAGGTTGGATGATAAATTGGATCAGCAAAAGGCGCTTTCTGGACAAATAAGAGATGAT
tcttgat putative branch site (score: 64)
aaacaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacagaattcggttgtatgtcactgttgagatgtttggtagtttgttgtacaatttctgagatcctcaattgtgaaacaattttcttgattgtcatgcagGCTGCTAAAAGGCATTTGACTCAGCGTATTGAAAGGTTGGATGATAAATTGGATCAGCAAAAGGCGCTTTCTGGACAAATAAGAGATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
cacagaa
- - - - - - ttgtatg
- - - - - - - - - - - ctgttga
- - - - - - - - - - - - - - - atgtttg
- - - - - - - - - - - - - - - - - - - - - ttgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - -tttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacaa