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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctttgctagtaaagtagtaatctgttcctagtgtttcagtattagaagagagatagatcagtcagttcaaagaacaagttactgaagaatgatgcattgtgcagAATGATGCGTACCAGGAGACGGGTTGCTACAACCTGCACTGCTCAGGGTTCGTCCAGACCAACAGCCGGATCGCCATGGGCGCCGCCATCTCCCCCATCT

Basic information

species Oryza sativa
transcript LOC_Os05g07764.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g07764.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G131650_T03 (Zea mays), 3'ss of exon 4
gtaagttctttgctagtaaagtagtaatctgttcctagtgtttcagtattagaagagagatagatcagtcagttcaaagaacaagttactgaagaatgatgcattgtgcagAATGATGCGTACCAGGAGACGGGTTGCTACAACCTGCACTGCTCAGGGTTCGTCCAGACCAACAGCCGGATCGCCATGGGCGCCGCCATCTCCCCCATCT
    ||||||  |         |||||      |    |   |||    | |       |    |   || |  ||   | ||||| |   || |  ||  |     |||| | || ||||||||||||||||| ||||||||||| |||||||| || ||||| ||||||| ||||||  | ||||| |||||||||||||| ||| |||
----gttcttcacctactggacagtaagagcagctccctcgatcatccctcgt-----caccattttttccggccatcaatcaagtaa--aaaaatggaaacgcaacgcagGACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGGCTTCGTGCAGACCAGCAGCCGCGTGGCCATCGGCGCCGCCATCTCGCCCGTCT

upper sequence: LOC_Os05g07764.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G131650_T04 (Zea mays), 3'ss of exon 4
gtaagttctttgctagtaaagtagtaatctgttcctagtgtttcagtattagaagagagatagatcagtcagttcaaagaacaagttactgaagaatgatgcattgtgcagAATGATGCGTACCAGGAGACGGGTTGCTACAACCTGCACTGCTCAGGGTTCGTCCAGACCAACAGCCGGATCGCCATGGGCGCCGCCATCTCCCCCATCT
                    |||  |     | ||| |    ||  |  |         |    |   || |  ||   | ||||| |   || |  ||  |     |||| | || ||||||||||||||||| ||||||||||| |||||||| || ||||| ||||||| ||||||  | ||||| |||||||||||||| ||| |||
--------------------gtaagagcagctccctcgatcatccctcgtc--------accattttttccggccatcaatcaagtaa--aaaaatggaaacgcaacgcagGACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGGCTTCGTGCAGACCAGCAGCCGCGTGGCCATCGGCGCCGCCATCTCGCCCGTCT