1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cttatgaaaccttatattgaagctttctatgatttcattccagattaatctttttttaagccaaatctgactattttacatatgtaattgtgtattacagATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGATCACATCCCGCATCACATCCACCCTGCAATCAGCATTTGGAGTAATCTA
species | Oryza sativa |
transcript | LOC_Os05g06700.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAG ATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGAEST: gi|44666536|gb|CR279970.1|CR279970
genomic: CTTGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAGgtatttccta ... tgtattacagATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGA
EST: CTTGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAG ATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGAEST: gi|11610325|gb|AU166001.1|AU166001
genomic: CTTGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAGgtatttccta ... tgtattacagATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGA
EST: CTTGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAG ATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGAEST: gi|27920727|gb|CB096535.1|CB096535
genomic: CTTGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAGgtatttccta ... tgtattacagATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGA
EST: CTTGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAG ATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGAEST: gi|88836836|gb|CI014837.1|CI014837
genomic: CTTGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAGgtatttccta ... tgtattacagATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGA
EST: CTTGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAG ATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGAEST: gi|66923099|gb|CX109947.1|CX109947
genomic: CTTGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAGgtatttccta ... tgtattacagATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGA
EST: CTTGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAG ATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGAEST: gi|88535959|gb|CI465678.1|CI465678
genomic: CTTGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAGgtatttccta ... tgtattacagATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGA
EST: TAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAG ATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGAEST: gi|88836266|gb|CI371371.1|CI371371
genomic: TAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAGgtatttccta ... tgtattacagATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGA
EST: C-TGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAG ATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGAEST: gi|44667444|gb|CR280878.1|CR280878
genomic: CTTGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAGgtatttccta ... tgtattacagATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGA
EST: CAGAGGCAACAAAG ATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGAEST: gi|88524410|gb|CI452320.1|CI452320
genomic: CAGATGCAACAAAGgtatttccta ... tgtattacagATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGA
EST: AGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAG ATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGAEST: gi|86598218|gb|CI354835.1|CI354835
genomic: AGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAGgtatttccta ... tgtattacagATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGA
EST: CTTGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAG ATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGA
genomic: CTTGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGATGCAACAAAGgtatttccta ... tgtattacagATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGA
taatctttttttaagccaaatctgactattttacatatgtaattgtgtattacagATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGATCACATCCCGCATCACATCCACCCTGCAATCAGCATTTGGAGTAATCTA
atctgac putative branch site (score: 69)
tattttacatatgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttatgaaaccttatattgaagctttctatgatttcattccagattaatctttttttaagccaaatctgactattttacatatgtaattgtgtattacagATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGATCACATCCCGCATCACATCCACCCTGCAATCAGCATTTGGAGTAATCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
cttatga
- - - - - - - - -tgaagct
- - - - - - - - - - - - - - - - tttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catatgt