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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttttcaagcaattttaagccaccatcatcgcctcagcggcatttcatagtcacctgtaatgtaccttctctcttctgtgcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTGGCTGAACCGAGACCCGGATGCATCCTCTGGTGGTGAGCTCGTCTTTGGT

Basic information

species Oryza sativa
transcript LOC_Os05g04630.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g04630.5 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G123029_T05 (Zea mays), 3'ss of exon 5
gtacgttttcaagcaattttaagccaccatcatcgcctcagcggcatttcatagtcacctgtaatgtaccttctctcttctgtgcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTGGCTGAACCGAGACCCGGATGCATCCTC---TGGTGGTGAGCTCGTCTTTGGT
                   || |   | ||| ||    |    |||       |    | |       ||     ||   |||        ||||||||||||||||||||||| ||||| || || || |||||||| || |||||||||||   |||||| ||  |  |    || || |||||||||||    
------------------gtaggtatctatc-tcattgctcttgcacccgccggcgggcggcggccggccca---tcacatgtaggttgccagGCAGAGCATGCAGGAGCAGGAGCTGCTGGCGGAGGACGTCTTCTCCTTCTGGCTGAACCGGAGCCCGGACGCGGCGGCGGCCGGCGGCGAGCTCGTCTTC---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29676557|gb|CB672832.1|CB672832
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCATGAGCAAGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29615431|gb|CB620443.1|CB620443
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29678514|gb|CB674789.1|CB674789
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|33677805|gb|CF306044.1|CF306044
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29680077|gb|CB676352.1|CB676352
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|117234267|gb|CT842364.1|CT842364
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|4714998|gb|AU056115.1|AU056115
EST:     TTGGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCA
genomic: TTGG-TCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCA
EST: gi|58588210|gb|CF986518.1|CF986518
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|58672443|gb|CK061129.1|CK061129
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|33676712|gb|CF304951.1|CF304951
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGT
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGT
EST: gi|58689178|gb|CK077865.1|CK077865
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAG
EST: gi|58688874|gb|CK077561.1|CK077561
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|58695208|gb|CK083895.1|CK083895
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29678428|gb|CB674703.1|CB674703
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCACATGATGTCTT-TCCCTTTT
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCG-TTTT
EST: gi|58692954|gb|CK081641.1|CK081641
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29638564|gb|CB643573.1|CB643573
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29676404|gb|CB672679.1|CB672679
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGACAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|27577353|gb|CB000048.1|CB000048
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29680749|gb|CB677024.1|CB677024
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29626867|gb|CB631878.1|CB631878
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29619013|gb|CB624025.1|CB624025
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29646767|gb|CB651774.1|CB651774
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|700515|gb|D46806.1|D46806
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACT-CTTTGCAGATGATGTCTTCTCGTTTT
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTT-GCAGATGATGTCTTCTCGTTTT
EST: gi|29615278|gb|CB620290.1|CB620290
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|84117024|gb|CD150791.1|CD150791
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|218487267|gb|FG944918.1|FG944918
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29667624|gb|CB663899.1|CB663899
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|58687763|gb|CK076450.1|CK076450
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|218485577|gb|FG958988.1|FG958988
EST:     TTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCACGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTT
genomic: TTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTC-CGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTT
EST: gi|29645305|gb|CB650312.1|CB650312
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29616093|gb|CB621105.1|CB621105
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29638609|gb|CB643618.1|CB643618
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|58692931|gb|CK081618.1|CK081618
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTCG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29678523|gb|CB674798.1|CB674798
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|218492774|gb|FG946027.1|FG946027
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29642216|gb|CB647223.1|CB647223
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCACGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|27577332|gb|CB000027.1|CB000027
EST:     CTTGGGCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAAACCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTAG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|58591597|gb|CF989905.1|CF989905
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGC
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGC
EST: gi|218501876|gb|FG958335.1|FG958335
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29675833|gb|CB672108.1|CB672108
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29643726|gb|CB648733.1|CB648733
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29616174|gb|CB621186.1|CB621186
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|218488300|gb|FG946413.1|FG946413
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|86596757|gb|CI286670.1|CI286670
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGC
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGC
EST: gi|58693676|gb|CK082363.1|CK082363
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG
EST: gi|29628863|gb|CB633874.1|CB633874
EST:     CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTG                         GCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTTG
genomic: CTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGgtacgttttc ... gcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagcggcatttcatagtcacctgtaatgtaccttctctcttctgtgcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTGGCTGAACCGAGACCCGGATGCATCCTCTGGTGGTGAGCTCGTCTTTGGT
                              ccttctctcttctgtg  CT-rich tract
       atttcata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgttttcaagcaattttaagccaccatcatcgcctcagcggcatttcatagtcacctgtaatgtaccttctctcttctgtgcaacaatagGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCGTTTTGGCTGAACCGAGACCCGGATGCATCCTCTGGTGGTGAGCTCGTCTTTGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG