1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatgctgctgatcttggtggcatcccaaattaatgtttggtgatcagctgttcagctctgttggttccttgctaccagtgctgattcgtgtggtggtgttgtttgatgcagCTTCCCTGGAAGCACGTCGCTTCATTTGGCTGCTCGTAGCGGGAACTTGGATTGCATCAGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGAT
species | Oryza sativa |
transcript | LOC_Os05g02130.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGTTGCTGGAGAACGGCGCCATTGTGTCGGCTTTGACAGGATCATATGG CTTCCCTGGAAGCACGTCGCTTCATTTGGCTGCTCGTAGCGGGAACTTGGAEST: gi|5443717|gb|AU062419.2|AU062419
genomic: GTGTTGCTGGAGAACGGCGCCATTGTGTCGGCTTTGACAGGATCATATGGgtaatgctgc ... tttgatgcagCTTCCCTGGAAGCACGTCGCTTCATTTGGCTGCTCGTAGCGGGAACTTGGA
EST: CGCCATTGTGTCGGCTTTGACAGGATCATATGG CTTCCCTGGAAGCACGTCGCTTCATTTGGCTGCTCGTAGCGGGAACTTGGAEST: gi|428376|gb|D24524.1|D24524
genomic: CGCCATTGTGTCGGCTTTGACAGGATCATATGGgtaatgctgc ... tttgatgcagCTTCCCTGGAAGCACGTCGCTTCATTTGGCTGCTCGTAGCGGGAACTTGGA
EST: GTGTTGCTGGAGAACGGCGCCATTNTGTCGGCTTTGACAGGATCATATGG CTTCCCTGGAAGCACGTCGCTTCATTTGGCTGCTCGTAGCGGGEST: gi|163927765|gb|EG712501.1|EG712501
genomic: GTGTTGCTGGAGAACGGCGCCATTGTGTCGGCTTTGACAGGATCATATGGgtaatgctgc ... tttgatgcagCTTCCCTGGAAGCACGTCGCTTCATTTGGCTGCTCGTAGCGGG
EST: GTGTTGCTGGAGAACGGCGCCATTGTGTCGGCTTTGACAGGATCATATGG CTTCCCTGGAAGCACGTCGCTTCATTTGGCTGCTCGTAGCGGGAACTTGGA
genomic: GTGTTGCTGGAGAACGGCGCCATTGTGTCGGCTTTGACAGGATCATATGGgtaatgctgc ... tttgatgcagCTTCCCTGGAAGCACGTCGCTTCATTTGGCTGCTCGTAGCGGGAACTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgctgctgatcttggtggcatcccaaattaatgtttggtgatcagctgttcagctctgttggttccttgctaccagtgctgattcgtgtggtggtgttgtttgatgcagCTTCCCTGGAAGCACGTCGCTTCATTTGGCTGCTCGTAGCGGGAACTTGGATTGCATCAGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT