1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...taggcctagacttttcatcgatgagtttatgcttttacatcacatgtccattttatttaccatcgttagtcatattactaactagttgggttaattgcagGCTGCTGACACAGATATTTCAGCTTTAGTGGAAATTGAGAAAAATAGCCGGCATCGCTTTGAGTTTTTCATGGATCTTGTTGGGGATCAGCCTGTCTGTG
species | Oryza sativa |
transcript | LOC_Os05g01470.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACGCCGTGGATTTCGGATCACAAAACTGTGGCAAACAAAAATTATGCAG GCTGCTGACACAGATATTTCAGCTTTAGTGGAAATTTGAGAAAAATAGCCGEST: gi|58673143|gb|CK061829.1|CK061829
genomic: GACGCCGTGGATTTCGGATCACAAAACTGTGGCAAACAAAAATTATGCAGgtagtgatgc ... ttaattgcagGCTGCTGACACAGATATTTCAGCTTTAGTGGAAATT-GAGAAAAATAGCCG
EST: GACGCCGTGGATTTCGGATCACAAAACTGTGGCAAACAAAAATTATGCAG GCTGCTGACACAGATATTTCAGCTTTAGTGGAAATTGAGAAAAATAGCCGGEST: gi|29630290|gb|CB635299.1|CB635299
genomic: GACGCCGTGGATTTCGGATCACAAAACTGTGGCAAACAAAAATTATGCAGgtagtgatgc ... ttaattgcagGCTGCTGACACAGATATTTCAGCTTTAGTGGAAATTGAGAAAAATAGCCGG
EST: GACGCCGTGGATTTCGGATCACAAAACTGTGGCAAACAAAAATTATGCAG GCTGCTGACACAGATATTTCAGCTTTAGTGGAAATTGAGAAAAATAGCCGG
genomic: GACGCCGTGGATTTCGGATCACAAAACTGTGGCAAACAAAAATTATGCAGgtagtgatgc ... ttaattgcagGCTGCTGACACAGATATTTCAGCTTTAGTGGAAATTGAGAAAAATAGCCGG
gtccattttatttaccatcgttagtcatattactaactagttgggttaattgcagGCTGCTGACACAGATATTTCAGCTTTAGTGGAAATTGAGAAAAATAGCCGGCATCGCTTTGAGTTTTTCATGGATCTTGTTGGGGATCAGCCTGTCTGTG
ttttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggcctagacttttcatcgatgagtttatgcttttacatcacatgtccattttatttaccatcgttagtcatattactaactagttgggttaattgcagGCTGCTGACACAGATATTTCAGCTTTAGTGGAAATTGAGAAAAATAGCCGGCATCGCTTTGAGTTTTTCATGGATCTTGTTGGGGATCAGCCTGTCTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA